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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGAAATGAATCCATTCACAATTGTTGATGGGACTCCATACCCGTTAGACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatcttgaattttatgtctccatatattcaccctaggccaaatcgacaaggagtagaccactgacttaactcttgttgattgtgtacag

Basic information

species Physcomitrella patens
transcript PP1S7_156V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67699027|gb|BJ959260.1|BJ959260
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|208374183|gb|DC945229.1|DC945229
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTTGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|208371001|gb|DC944376.1|DC944376
EST:     GACATGCGT-GTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|208362836|gb|DC950636.1|DC950636
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|162270682|gb|FC446295.1|FC446295
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTT
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTT
EST: gi|208384409|gb|DC928160.1|DC928160
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|162203672|gb|FC378547.1|FC378547
EST:     GTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|208374459|gb|DC948435.1|DC948435
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAAAACANTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|208366133|gb|DC955234.1|DC955234
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCNAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|162198094|gb|FC372121.1|FC372121
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|67724921|gb|BJ975180.1|BJ975180
EST:     GACNTGCGTGGTGAACTGGATGACACTGC-TTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|208379626|gb|DC927123.1|DC927123
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|208386150|gb|DC949061.1|DC949061
EST:     GACATGCGTGGTGAACTGGATGACANTGCTTT-TTCAAGAACANTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTNGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|208364385|gb|DC950686.1|DC950686
EST:     GACAGGCNTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|37851290|gb|BJ609298.1|BJ609298
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGANCACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|208370928|gb|DC944303.1|DC944303
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|67725040|gb|BJ975299.1|BJ975299
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGG
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagAT-GGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGG
EST: gi|208364465|gb|DC958034.1|DC958034
EST:     GACATGCGTGGTGAACTGGATGACATTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTNTGCCTTTTGGCANGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|100384726|gb|BY950716.1|BY950716
EST:     GACATGCCTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGGGTTTCCTTTGCCT
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCT
EST: gi|208354287|gb|DC957465.1|DC957465
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|208360305|gb|DC950250.1|DC950250
EST:     GACATGCGT-GTGAACTGGATGACACTGCTTTATTCNAGNACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCNGG
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCC-GG
EST: gi|208379943|gb|DC927669.1|DC927669
EST:     GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA                         ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: gi|100355867|gb|BY946078.1|BY946078
EST:     GACATGCGTGGGGAACTGGATGACACTGCTTTATTCAAGAACACTCAAAA                         AGGGGGAAATG
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTGGAAATGAATCCATTCACAATTGTTGATGGGACTCCATACCCGTTAGACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatcttgaattttatgtctccatatattcaccctaggccaaatcgacaaggagtagaccactgacttaactcttgttgattgtgtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC