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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAGAAAAGCGCAGTTCTTTACAGGCCAAAATTGATAGTAGCTGGTGCCAGTGCCTATGCTCGCCATTACGACTATGCTCGTATGCGCAAGgtgtgtttaaatttgatgtttgcggcctttgcattatgtgaaattgcatcatttgtatgtttctacagtgtaatgttaactatccgatactctactgtgtacctgctccttcgagttcatatgtgatctgcaaattgtctttctcatgcag

Basic information

species Physcomitrella patens
transcript PP1S79_54V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S79_54V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 8
ATGGAGAAAAGCGCAGTTCTTTACAGGCCAAAATTGATAGTAGCTGGTGCCAGTGCCTATGCTCGCCATTACGACTATGCTCGTATGCGCAAGgtgtgtttaaatttgatgtttgcggcctttgcattatgtgaaattgcatcatttgtatgtttctacagtgtaatgttaactatccgatactctactgtgtacctgctccttcgagttcatatgtgatctgcaaattgtctttctcatgcag
 ||||||||||||| |||||||  |||||||| |||||  | |||||||| ||||| |||||||| |  || || ||||  |||||||| ||||   | ||   ||  | | | |     |||     |  || ||  |    |  || |  ||  || | |  |  |     ||    | | |  || | |  | |  |  ||  |      |  | ||     |||  | | | ||   |||
TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAAGTGCATATGCTCGGCTATATGATTATGACCGTATGCGGAAGgcaaggtttctttccacgatagtattttttctccaagatgcaaggg----agctgcacattattatattacagagaactatacagaacattgaaccgcgatctttttttttttatcaatcaaataattccataatgttatgtgtcg-acag

upper sequence: PP1S79_54V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 8
ATGGAGAAAAGCGCAGTTCTTTACAGGCCAAAATTGATAGTAGCTGGTGCCAGTGCCTATGCTCGCCATTACGACTATGCTCGTATGCGCAAGgtgtgtttaaatttgatgtttgcggcctttgcattatgtgaaattgcatcatttgtatgtttctacagtgtaatgttaactatccgatactctactgtgtacctgctccttcgagttcatatgtgatctgcaaattgtctttctcatgcag
 |||||||||| ||||| ||||  ||||||||||| ||||| |||||||| ||||| |||||||||| ||| || ||||| ||| | ||||||||   || | || ||||    |   | |  | |||   ||   ||  | || ||   |  |  |    |  ||| |||  |    ||   | ||| |                                                      
TTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaatt-atatctgataca-gaaacttaggtatttaatgt--ttagaacaattcagtcatgatgatattgaatcttatatgcttgaatttgtacag------------------------------------------------------

upper sequence: PP1S79_54V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 8
ATGGAGAAAAGCGCAGTTCTTTACAGGCCAAAATTGATAGTAGCTGGTGCCAGTGCCTATGCTCGCCATTACGACTATGCTCGTATGCGCAAGgtgtgtttaaatttgatgtttgcggcctttgcattatgtgaaattgcatcatttgtatgtttctacagtgtaatgttaactatccgatactctactgtgtacctgctccttcgagttcatatgtgatctgcaaattgtctttctcatgcag
 |||||||||| ||||  ||||  ||||||||||| ||||| |||||||| ||||| |||||||||| ||| || ||||| ||| | ||||||||   |||| || ||||    |   | |  | |||   ||   ||  | || ||   |       ||   |  | || | | |   || ||  | | ||||                                                  
TTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgta-atttatatctgataca-gaaacttaggtatttaatgt--ttagaacaattcagt-------catgatggtattgaatcttttatgcttgaatttgtatag-----------------------------------------------

upper sequence: PP1S79_54V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT4G37930.1 (Arabidopsis thaliana), 5'ss of exon 8
ATGGAGAAAAGCGCAGTTCTTTACAGGCCAAAATTGATAGTAGCTGGTGCCAGTGCCTATGCTCGCCATTACGACTATGCTCGTATGCGCAAGgtgtgtttaaatttgatgtttgcggcctttgcattatgtgaaattgca-tcatttgtatgtttctacagtgtaatgttaactatccgatactctactgtgtacctgctccttcgagttcatatgtgatctgcaaattgtctttctcatgcag
||||||||||| ||   ||||| ||||||||||||||| || |||||||| ||||| |||||| |    || |||||||| || ||  | |||||   ||| | | | || |          | ||  |      |||| | ||| | ||  ||||  |     |     |   |  ||                                                                  
ATGGAGAAAAGTGCTACTCTTTTCAGGCCAAAATTGATTGTTGCTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgta-atttcagtctcatatccaa-----ctacagaacagattattgtaatcagtagtgagttttgat----tcgaactcttttcccag----------------------------------------------------------------