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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAAACCCTATCGACTTTGAGAACAGTGAAGGAAATTTAGGCTTGGCCAACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAGgtatttatgaatttttcatgcgaaatatttcctgagtaaaactagcactgcaatcactttccagtgatgtacatcgtttctgagcaagtctcttgaaact...

Basic information

species Physcomitrella patens
transcript PP1S78_3V6.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162170404|gb|FC346796.1|FC346796
EST:     ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAG                         AGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
genomic: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAGgtatttatga ... taacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
EST: gi|162231111|gb|FC406222.1|FC406222
EST:     ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAG                         AGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
genomic: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAGgtatttatga ... taacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
EST: gi|162167458|gb|FC343668.1|FC343668
EST:     ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAG                         AGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
genomic: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAGgtatttatga ... taacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
EST: gi|162195993|gb|FC372684.1|FC372684
EST:     ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAG                         AGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
genomic: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAGgtatttatga ... taacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC