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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggcttatttgccttctgataaaacttagctcttaagcttagaccttatattcctagctccctccacttgctgttggtgcagtggagttacatgtca...

Basic information

species Physcomitrella patens
transcript PP1S76_8V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37847431|gb|BJ605439.1|BJ605439
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37849841|gb|BJ607849.1|BJ607849
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37853675|gb|BJ611683.1|BJ611683
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37838648|gb|BJ596656.1|BJ596656
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|162216227|gb|FC392644.1|FC392644
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|162192369|gb|FC368583.1|FC368583
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|18332625|gb|BJ164638.1|BJ164638
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|67724750|gb|BJ975009.1|BJ975009
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37848981|gb|BJ606989.1|BJ606989
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|162175399|gb|FC352325.1|FC352325
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37830105|gb|BJ588117.1|BJ588117
EST:     TGNCGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTANTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|162258356|gb|FC434283.1|FC434283
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37849544|gb|BJ607552.1|BJ607552
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|18340077|gb|BJ172105.1|BJ172105
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37844589|gb|BJ602597.1|BJ602597
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|208351275|gb|DC921554.1|DC921554
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|208398631|gb|DC920526.1|DC920526
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|162183971|gb|FC359341.1|FC359341
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|67694850|gb|BJ955083.1|BJ955083
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37850732|gb|BJ608740.1|BJ608740
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|67727273|gb|BJ977532.1|BJ977532
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|208348147|gb|DC920938.1|DC920938
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|162224508|gb|FC399884.1|FC399884
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37824942|gb|BJ583008.1|BJ583008
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37850796|gb|BJ608804.1|BJ608804
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|208356146|gb|DC946236.1|DC946236
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
EST: gi|37841120|gb|BJ599128.1|BJ599128
EST:     TGACGCGGAATGGAGAATTAATTGGAAATCGG                         GCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG
genomic: TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggctta ... ccacctgcagGCGGCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACGCGGAATGGAGAATTAATTGGAAATCGGgtacggcttatttgccttctgataaaacttagctcttaagcttagaccttatattcctagctccctccacttgctgttggtgcagtggagttacatgtca

- - - - - TGGAGA
- - - - -  GGAGAA