1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTCAGTGCCCTGAATGTAAATGTACCAACACATGGGGCTCCTACAACTGCGAATGCTCTGGCGGACTTCTCTACATGCAGGAGCACGATACTTGCATAAgtgagtcctctgcgtcttagtaaccacatgttaagttttacgatgcattgtggtggatagtttagaacaaaataccaaaacaacggttgagtcaattgatcttatttgttgagtaatttatcattgcag
species | Physcomitrella patens |
transcript | PP1S76_79V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATGCAGGAGCACGATACTTGCATAA ACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCTEST: gi|37830104|gb|BJ588116.1|BJ588116
genomic: CATGCAGGAGCACGATACTTGCATAAgtgagtcctc ... atcattgcagACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCT
EST: TGCAGGAGCACGATACTTGCATAA ACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCTEST: gi|37831638|gb|BJ589650.1|BJ589650
genomic: TGCAGGAGCACGATACTTGCATAAgtgagtcctc ... atcattgcagACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCT
EST: TGCAGGAGCACGATACTTGCATAA ACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCTEST: gi|37848184|gb|BJ606192.1|BJ606192
genomic: TGCAGGAGCACGATACTTGCATAAgtgagtcctc ... atcattgcagACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCT
EST: CGAATGCTCTGGCGGACTTCTCTACATGCAGGAGCACGATACTTGCATAA ACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCTEST: gi|37853262|gb|BJ611270.1|BJ611270
genomic: CGAATGCTCTGGCGGACTTCTCTACATGCAGGAGCACGATACTTGCATAAgtgagtcctc ... atcattgcagACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCT
EST: CGAATGCTCTGGCGGACTTCTCTACATGCAGGAGCACGATACTTGCATAA ACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCTEST: gi|67727112|gb|BJ977371.1|BJ977371
genomic: CGAATGCTCTGGCGGACTTCTCTACATGCAGGAGCACGATACTTGCATAAgtgagtcctc ... atcattgcagACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCT
EST: CGAATGCTCTGGCGGACTTCTCTACATGCAGGAGCACGATACTTGCATAA ACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCT
genomic: CGAATGCTCTGGCGGACTTCTCTACATGCAGGAGCACGATACTTGCATAAgtgagtcctc ... atcattgcagACCAGAGGAGTGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCAGTGCCCTGAATGTAAATGTACCAACACATGGGGCTCCTACAACTGCGAATGCTCTGGCGGACTTCTCTACATGCAGGAGCACGATACTTGCATAAgtgagtcctctgcgtcttagtaaccacatgttaagttttacgatgcattgtggtggatagtttagaacaaaataccaaaacaacggttgagtcaattgatcttatttgttgagtaatttatcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA