1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTGTTAGCCACAGGTGGCATTCCCATGGGTATTGGCAAAAATTCAGTTGTGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatgttagatgttagaagttactgaatggaatcaaggcgtgttgtctttcgtgcacacaaatttgttcatgttgttcaaatccaactctatcgc...
species | Physcomitrella patens |
transcript | PP1S76_105V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|162192361|gb|FC368575.1|FC368575
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|37852816|gb|BJ610824.1|BJ610824
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|67692323|gb|BJ952556.1|BJ952556
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|67692251|gb|BJ952484.1|BJ952484
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: CGGAGAAAATGTGAANG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAAACAGATGGTTEST: gi|18340315|gb|BJ172343.1|BJ172343
genomic: CGGAGAAAATGTGAA-Ggtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAG-AAACAGATGGTT
EST: GAGAAAATGTGAAG ATTGTGAATAAGNACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|162192360|gb|FC368574.1|FC368574
genomic: GAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|18341189|gb|BJ173222.1|BJ173222
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|208357816|gb|DC918606.1|DC918606
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACANGAATGCACGAATCGGAGAAAATGTGAAG ATNGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|37824962|gb|BJ583028.1|BJ583028
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|162150332|gb|FC326604.1|FC326604
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|208395503|gb|DC928918.1|DC928918
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|162166090|gb|FC343372.1|FC343372
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|18334116|gb|BJ166132.1|BJ166132
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGGCAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGNAACANATGGTTATEST: gi|162167188|gb|FC342753.1|FC342753
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTATEST: gi|37829832|gb|BJ587844.1|BJ587844
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
EST: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAG ATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
genomic: TGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatg ... atgtctgcagATTGTGAATAAGGACAGTGTGCAAGAAGCTGCTCGAGAAACAGATGGTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTAGCCACAGGTGGCATTCCCATGGGTATTGGCAAAAATTCAGTTGTGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatgttagatgttagaagttactgaatggaatcaaggcgtgttgtctttcgtgcacacaaatttgttcatgttgttcaaatccaactctatcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA