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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCGGTGAAACGCCTGCGTAGTTGTGGAGCAGTGATGGTTGGGAAGACCAACATGCACGAACTTGGGATGGGCACCACTGGCATCAATCCACACTATGGgtgcgattttatggttctagaagtactaactgcgtgatacaatcctgatacttgcaaggctcgcagaatcttatcgctgttgattgacacgaaaggattttcctatattttcatcttaccgcctgatagtgaattcaacttctcagatttaaatgaccctatttgtggaatcatttagcgtgaaacatttctttctgcag

Basic information

species Physcomitrella patens
transcript PP1S6_422V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S6_422V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA08G00530.1 (Glycine max), 5'ss of exon 7
AAGCGGTG--AAACGCCTGCGTAGTTGTGGAGCAGTGATGGTTGGGAAGACCAACATGCACGAACTTGGGATGGGCACCACTGGCATCAATCCACACTATGGgtgcgattttatg-gttctagaagtactaactgcgtgatacaatcctgatacttgcaaggctcgcagaatcttatcgctg-ttgattgacacgaaaggattttcctatattttcatcttaccgcctgatagtgaattcaacttctcagatttaaatgaccctatttgtggaatcatttagcgtgaaacatttctttctgcag
  || |||  || || ||| |    ||||| ||  |  | ||||||||||| || ||||| ||||||||| | || || | ||||||||||||||| |||||||  ||     || ||| || ||    ||  |   | | |  ||  |    |||    | ||  | |||   |   |    || |||  || || | || | | | || |||   |  | |||                                                                               
--GCTGTGTTAAGCGTCTGAGATTATGTGGTGCCATACTTGTTGGGAAGACTAATATGCATGAACTTGGGGTTGGAACTAGTGGCATCAATCCACATTATGGgtatgaaaccgtgagttatacaacctatattttattcacattatgttacatcttttgtgactt-ctgaactatgcagtaaattaatt--catgacaagagtatgc-atgtttatttacttccgtag----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208380379|gb|DC907704.1|DC907704
EST:     AACATGCACGAACTTGGGATGGGCACCACTGGCATCAATCCACACTATGG                         AGCAACCCGTAACCCCCACAACATACTGAGGGTTTCTGGGGGTTCGTCTGG
genomic: AACATGCACGAACTTGGGATGGGCACCACTGGCATCAATCCACACTATGGgtgcgatttt ... ctttctgcagAGCAACCCGTAACCCCCACAACATACTGAGGGTTTCTGGGGGTTCGTCTGG