1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTATTAATGACATCGTAGGAACAGTGATGTTTATGCCGCTGATCTTCCCGTTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAAgtaagtaactggttgctgcctttgatgatttttaaaataaggtacctgggtagatatggatagaaagaagctgcaacaactctccgatcccagggtttctccaatttttttaaactaatgaactcgtggacatctcatcctaattacaattcttgcatttgaattgtcag
species | Physcomitrella patens |
transcript | PP1S66_112V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGAGCCCCTGGAGA-TTAAGCACAACACTCACCACGCCCACAACAAACA- GTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACTTGTATGACCEST: gi|162190533|gb|FC366171.1|FC366171
genomic: TGAGCCC-TGGAGAATTAAGCACAACACTCACCACGCCCACACCAA-CAAgtaagtaact ... gaattgtcagGTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACC
EST: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAA GTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCGEST: gi|162193992|gb|FC371805.1|FC371805
genomic: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAAgtaagtaact ... gaattgtcagGTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCG
EST: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAA GTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCGEST: gi|162154894|gb|FC331936.1|FC331936
genomic: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAAgtaagtaact ... gaattgtcagGTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCG
EST: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAA GTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCGEST: gi|162234885|gb|FC409319.1|FC409319
genomic: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAAgtaagtaact ... gaattgtcagGTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCG
EST: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAA GTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCGEST: gi|162221927|gb|FC398195.1|FC398195
genomic: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAAgtaagtaact ... gaattgtcagGTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCG
EST: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAA GTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCGEST: gi|162205293|gb|FC380975.1|FC380975
genomic: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAAgtaagtaact ... gaattgtcagGTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCG
EST: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAA GTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCG
genomic: TTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAAgtaagtaact ... gaattgtcagGTTGGTCATGGACACAGCATGGCAACCATTCAGGCCATACATGTATGACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATTAATGACATCGTAGGAACAGTGATGTTTATGCCGCTGATCTTCCCGTTTGAGCCCTGGAGAATTAAGCACAACACTCACCACGCCCACACCAACAAgtaagtaactggttgctgcctttgatgatttttaaaataaggtacctgggtagatatggatagaaagaagctgcaacaactctccgatcccagggtttctccaatttttttaaactaatgaactcgtggacatctcatcctaattacaattcttgcatttgaattgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA