1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGCCTTGGAGTTGGTTTCTTTTCACACAGTGTCAAAGGGCTTCCTTGGAGAATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgtttttgactactacttcaccatttcgctgtggaatcaagacgaatatcttcctgtgtagtcgcattgttcgtgctcaatacatgtcaagtgtcaattgtaggatcccttcatggtagttctcggtatcaagtattatgtctaactgctcttcttatgtccag
species | Physcomitrella patens |
transcript | PP1S64_220V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAG ACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCEST: gi|162156210|gb|FC332585.1|FC332585
genomic: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgtttttgact ... ttatgtccagACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTC
EST: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAG ACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCEST: gi|162165158|gb|FC341153.1|FC341153
genomic: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgtttttgact ... ttatgtccagACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTC
EST: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAG ACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCEST: gi|162170441|gb|FC347626.1|FC347626
genomic: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgtttttgact ... ttatgtccagACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTC
EST: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAG ACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCEST: gi|162191349|gb|FC368145.1|FC368145
genomic: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgtttttgact ... ttatgtccagACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTC
EST: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAG ACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCEST: gi|162246304|gb|FC421049.1|FC421049
genomic: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgtttttgact ... ttatgtccagACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTC
EST: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAG ACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCEST: gi|162244637|gb|FC424604.1|FC424604
genomic: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgtttttgact ... ttatgtccagACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTC
EST: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAG ACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTCEST: gi|162188744|gb|FC364030.1|FC364030
genomic: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgtttttgact ... ttatgtccagACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTC
EST: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAG ACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgtttttgact ... ttatgtccagACTGTGGAGGAGCTGTACAAGGTTGCCTCGATTGCTCTGAGCCCCAACGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCTTGGAGTTGGTTTCTTTTCACACAGTGTCAAAGGGCTTCCTTGGAGAATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgtttttgactactacttcaccatttcgctgtggaatcaagacgaatatcttcctgtgtagtcgcattgttcgtgctcaatacatgtcaagtgtcaattgtaggatcccttcatggtagttctcggtatcaagtattatgtctaactgctcttcttatgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA