1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGATTTCCTGGTCGCGGACAGGTGTTAGGAAGCTCGGTTTCAACTCCTGCTCAAGTGAGATCACCGGTACTATCAGGAGgtcggaggcccaaacctagtagcaatcagacagacttgcatgcaaggctcttggatccaggccctgctgtgtcttcacctgaaatgcagcagaacctttc...
species | Physcomitrella patens |
transcript | PP1S62_89V6.4 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGCTCGGTTTCAACTCCTGCTCAAGTGAGATCACCGGTACTATCAGGAG GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACEST: gi|37848491|gb|BJ606499.1|BJ606499
genomic: AAGCTCGGTTTCAACTCCTGCTCAAGTGAGATCACCGGTACTATCAGGAGgtcggaggcc ... tgccttgcagGGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC
EST: AAGCTCGGTTTCAACTCCTGCTCAAGTGAGATCACCGGTACTATCAGGAG GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC
genomic: AAGCTCGGTTTCAACTCCTGCTCAAGTGAGATCACCGGTACTATCAGGAGgtcggaggcc ... tgccttgcagGGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTTCCTGGTCGCGGACAGGTGTTAGGAAGCTCGGTTTCAACTCCTGCTCAAGTGAGATCACCGGTACTATCAGGAGgtcggaggcccaaacctagtagcaatcagacagacttgcatgcaaggctcttggatccaggccctgctgtgtcttcacctgaaatgcagcagaacctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA