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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTGGCGAAAAGGGGAGTGATTATTTTGCCTGACATCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcgatttttaactattgcagaggggctgttttcggagtggtaattcatttatcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacag

Basic information

species Physcomitrella patens
transcript PP1S62_236V6.5
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S62_236V6.7 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os03g58040.3 (Oryza sativa), 5'ss of exon 9
ATCTTGGCGAAAAGGGGAGTGATTATTTTGCCTGACATCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcgatttttaactattgcagaggggctgttttcggagtggtaattcatttatcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacag
||| || | || |  || ||  | ||| | || ||||||   || ||||  || || || ||||| ||||||||||||||||||||||||||||  | |    | | |  | | |   ||   ||| ||||   |||  |           || |    ||  |     ||  ||   | |||||||  | |      | | |      || |  ||| |   
ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagtt--actgcacaatctccctgtg---ctaaattcagagtaaaaatgtaa--------agcagtcaggttaagc---aagagactgatgcatgaagctgct-----gctgttcttgtggttt--gttcag--

upper sequence: PP1S62_236V6.7 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA02G07940.1 (Glycine max), 5'ss of exon 9
ATCTTGGCGAAAAGGGGAGTGATTATTTTGCCTGACATCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcgatttttaactattgcagaggggctgttttcggagtggtaattcatttatcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacag
||  ||   || |  || ||  | ||  | || || || | |||||| | ||||||||| |||||||||||||| |||||||| ||||||| |   |  | | |  ||| || | ||     || |  | |  |  ||| | |   |||   | ||| | |    |||||   | |   | | |||    | |                              
ATTCTGAAAAAGAAAGGGGTTGTGATCCTCCCAGATATATTTGCTAATTCTGGAGGAGTCACAGTCAGCTACTTTGAGTGGGTGCAGgtaactattaactgttatgatttcacatgg-----ttgcatatt--tggttcctctcatatta--atttgtcatatcatttgaaaaaagctaaaaagaaccatagtaag---------------------------

upper sequence: PP1S62_236V6.7 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCTTGGCGAAAAGGGGAGTGATTATTTTGCCTGACATCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga--tttttaactattgcagaggggctgttttcggagtggtaattcatttatcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacag
||| |    || |  || ||| ||||| | || ||||| ||||| |||| ||||||||| || || || |||||||| |||||||||||| ||  ||   | | ||| | |       | | |     | | | | |    |   ||  |  |||  | | ||  ||||   || | ||  |                                           
ATCCTAAGTAAGAAAGGTGTGGTTATTCTCCCGGACATATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGgtatgtatgagtctctcaacaacttacctttgacagaccaagtactcgaacaaaaccgattttgatcagattagtt--gtttccggtaatgtgcag------------------------------------------

upper sequence: PP1S62_236V6.7 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT3G03910.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCTTGGCGAAAAGGGGAGTGATTATTTTGCCTGACATCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaag-ttcgatttttaactattgcagaggggctgttttcggagtggtaattcatttatcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacag
||||||  ||| |  || || || ||  | || || || || || ||||  |||||||| || || || |||||||||||||||||||||||  ||||   | ||  | || |   |  ||  |    || |   ||  || |        ||||   |||   | |||| || |  |||   |||||                                    
ATCTTGAAGAAGAAAGGTGTTATGATCCTCCCAGATATATACGCAAACTCAGGAGGAGTCACTGTAAGTTACTTCGAGTGGGTTCAGgtaagactcgaaaatcaag-actgtat--gacctaatc---gaatctaaagccactcg-----atcaaaacact---gatttgtgttatatctgtgtgaag------------------------------------

upper sequence: PP1S62_236V6.7 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv16s0039g02720.t01 (Vitis vinifera), 5'ss of exon 8
ATCTTGGCGAAAAGGGGAGTGATTATTTTGCCTGACATCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcgatttttaactattgcagaggggctgttttcggagtggtaat-tcattt--atcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacag
||  |  | || |  |||||  | ||  |||||||||||||||||||   |||||| ||||| || ||||| || |||||||||||||||| |||  | | ||  | ||  | |      |||||  ||    | || || |||  | ||  |  ||||||    |    | |||     |  | |    |  ||   |    | |   |                
ATTCTATCCAAGAAAGGAGTCGTAATCCTGCCTGACATCTATGCTAATGCTGGAGGTGTGACCGTGAGCTATTTTGAGTGGGTTCAGgtaa-ttccctctatatttcttatatatcatgggttttatgaaaaattatatcgtttgaaacacagataattgatggggaaagt-agtagtaacatcttaggattaatggttttatgttggcag---------------

upper sequence: PP1S62_236V6.7 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv16s0039g02750.t01 (Vitis vinifera), 5'ss of exon 8
ATCTTGGCGAAAAGGGGAGTGATTATTTTGCCTGACATCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcgatttttaactattgcagaggggctgtttt-cggagtggtaattcattt--atcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacag
||  |  | || | ||||||  | ||  | || ||||||||||||||   |||||| ||||| || ||||| || |||||||||||||||| |||  | | ||  | ||  | | |     |||| |   |   ||  || |||  | ||| |  ||||||         | |||     |  | |    |  ||   |    | |   |                
ATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCTGGAGGTGTGACTGTGAGCTATTTTGAGTGGGTTCAGgtaa-ttccctctatatttcttatatatgatggattttacaatgaattatatcgtttgaaacatagataattgataggaaaagt-agtagtaacatcttaggattaatggttttatgttggcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37847875|gb|BJ605883.1|BJ605883
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162253970|gb|FC430214.1|FC430214
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162202603|gb|FC378961.1|FC378961
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37825246|gb|BJ583312.1|BJ583312
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37823205|gb|BJ581271.1|BJ581271
EST:     GTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: GTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162176129|gb|FC351078.1|FC351078
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162275835|gb|FC451396.1|FC451396
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162196718|gb|FC373838.1|FC373838
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|19790576|gb|BQ041944.1|BQ041944
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTNGAA
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCT-GAA
EST: gi|37826170|gb|BJ584182.1|BJ584182
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37845947|gb|BJ603955.1|BJ603955
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37842259|gb|BJ600267.1|BJ600267
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37839593|gb|BJ597601.1|BJ597601
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGNTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37848425|gb|BJ606433.1|BJ606433
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162167227|gb|FC342792.1|FC342792
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|67697002|gb|BJ957235.1|BJ957235
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37827344|gb|BJ585356.1|BJ585356
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37828278|gb|BJ586290.1|BJ586290
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162277507|gb|FC453450.1|FC453450
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37852839|gb|BJ610847.1|BJ610847
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37838997|gb|BJ597005.1|BJ597005
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|208378444|gb|DC923080.1|DC923080
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162162142|gb|FC337716.1|FC337716
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37826352|gb|BJ584364.1|BJ584364
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162194067|gb|FC370242.1|FC370242
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162151268|gb|FC327722.1|FC327722
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|37839189|gb|BJ597197.1|BJ597197
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162244814|gb|FC425470.1|FC425470
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|67696602|gb|BJ956835.1|BJ956835
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
EST: gi|162196717|gb|FC373837.1|FC373837
EST:     TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAG                         AACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG
genomic: TCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcga ... ctgtttacagAACATTCAAGGATTTCCTTGGGAGGAGGAAAAGGTGAATACCAACCTGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTTGGCGAAAAGGGGAGTGATTATTTTGCCTGACATCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcgatttttaactattgcagaggggctgttttcggagtggtaattcatttatcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacag

- - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT