1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGgtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcag
species | Physcomitrella patens |
transcript | PP1S60_100V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAG GTGTTGGGGACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTACEST: gi|162249101|gb|FC420378.1|FC420378
genomic: CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGgtagggcaca ... tttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC
EST: CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAG GTGTTGGGGACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTACEST: gi|18339293|gb|BJ171320.1|BJ171320
genomic: CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGgtagggcaca ... tttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC
EST: GTAGATCAATTGGTGGAGATTATTAAG GTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACEST: gi|162165970|gb|FC341801.1|FC341801
genomic: GTAGATCAATTGGTGGAGATTATTAAGgtagggcaca ... tttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC
EST: CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAG GTGTTGGGGACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTAC
genomic: CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGgtagggcaca ... tttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGgtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcag
- - - - - - - - - AGTGGA
- - - - - - - - - GTGGAG
- - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAT