1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACTCGAGATGTGGCTGATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGAAGAAACTTGGCGGgttagtggtactcctgcttattgtaacatctttgtagagatttgtgttcataaaccaagttctgatcagtgatgttgaagtcgaaggcactatgtttttttgttgaagtggaaggtcgtagaaggcttattcaactgaggttaatttttggatgcag
species | Physcomitrella patens |
transcript | PP1S5_195V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATGGTGGCCGAAAATGGAAGAAACTTGGCGG ACGAGGTGGGAAAATTTTCAAGEST: gi|67571511|gb|BJ944335.1|BJ944335
genomic: ATGGTGGCCGAAAATGGAAGAAACTTGGCGGgttagtggta ... ttggatgcagACGAGGTGGGAAAATTTTCAAG
EST: GATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGAAGAAACTTGGCGG ACGAGGTGGGAAAATTTTCAAGEST: gi|162232167|gb|FC407730.1|FC407730
genomic: GATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGAAGAAACTTGGCGGgttagtggta ... ttggatgcagACGAGGTGGGAAAATTTTCAAG
EST: GATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGAAGAAACTTGGCGG ACGAGGTGGGAAAATTTTCAAGEST: gi|162159330|gb|FC335144.1|FC335144
genomic: GATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGAAGAAACTTGGCGGgttagtggta ... ttggatgcagACGAGGTGGGAAAATTTTCAAG
EST: GATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGAAGAAACTTGGCGG ACGAGGTGGGAAAATTTTCAAG
genomic: GATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGAAGAAACTTGGCGGgttagtggta ... ttggatgcagACGAGGTGGGAAAATTTTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACTCGAGATGTGGCTGATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGAAGAAACTTGGCGGgttagtggtactcctgcttattgtaacatctttgtagagatttgtgttcataaaccaagttctgatcagtgatgttgaagtcgaaggcactatgtttttttgttgaagtggaaggtcgtagaaggcttattcaactgaggttaatttttggatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA