1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTGGCAGAGGAATTGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTGCATCTCCACAGgtgggtcgtctaatatgcttcttcagatcaccttgtcaaattgtagaggtgacatgggtgtcgttgtagtgttccatgcagaaattgtgcctgaatatgaatgtgtttggcag
species | Physcomitrella patens |
transcript | PP1S58_197V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTGCATCTCCACAG GATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAGEST: gi|67726513|gb|BJ976772.1|BJ976772
genomic: TGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTGCATCTCCACAGgtgggtcgtc ... tgtttggcagGATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAG
EST: TGGCCAGCATCTTTTATTCGGTGCATCTCCACAG GATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAGEST: gi|6167306|gb|AW145570.1|AW145570
genomic: TGGCCAGCATCTTTTATTCGGTGCATCTCCACAGgtgggtcgtc ... tgtttggcagGATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAG
EST: CAGCATCTTTTATTCGGTGCATCTCCACAG GATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAGEST: gi|67718012|gb|BJ968271.1|BJ968271
genomic: CAGCATCTTTTATTCGGTGCATCTCCACAGgtgggtcgtc ... tgtttggcagGATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAG
EST: TGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTGCATCTCCACAG GATGTGTGGGCAGAGTTAGGTCGGCCATGTG
genomic: TGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTGCATCTCCACAGgtgggtcgtc ... tgtttggcagGATGTGTGGGCAGAGTTAGGTCGGCCATGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGCAGAGGAATTGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTGCATCTCCACAGgtgggtcgtctaatatgcttcttcagatcaccttgtcaaattgtagaggtgacatgggtgtcgttgtagtgttccatgcagaaattgtgcctgaatatgaatgtgtttggcag
- - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - TGGTGG