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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCGTACCGGCAGCAAAGATTTATGCAGGAAGTGACAATACAGTACAATTTATGCAATGAACCGTGgtaagtcatgttaaaactcgttgatagtatcttaagtatgcatttatgggcttgccaatcatgtagtgcatgtattttggggccatgtttttggcatgct...

Basic information

species Physcomitrella patens
transcript PP1S55_201V6.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S55_201V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA09G28530.1 (Glycine max), 5'ss of exon 7
AATGCGTACCGGCAGCAAAGATTTATGCAGGAAGTGACAATACAGTACAATTTATGCAATGAACCGTGgtaagtcatgttaaaactcgttgatagtatcttaagtatgcatttatgggcttgccaatcatgtagtgcatgtattttggggccatgtttttggcatgct-----
||||| |  ||||||||||||||| | |  ||||| ||||||||||||||  | ||||||||||| ||||| |   |||   || | |   |    |   |||      |    || | ||    ||   | ||   || |         ||| |||| ||| ||  |     
AATGCATTGCGGCAGCAAAGATTTGTACGCGAAGTTACAATACAGTACAACCTCTGCAATGAACCATGgtatgct-tgtattaattggcaaagtacagtctaatacaataacattgtgttttaagatggagcagaaaatat----caaatccaagtttgtggtatttttgtaa

upper sequence: PP1S55_201V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA16G33300.1 (Glycine max), 5'ss of exon 8
AATGCGTACCGGCAGCAAAGATTTATGCAGGAAGTGACAATACAGTACAATTTATGCAATGAACCGTGgtaagtcatgttaaaactcgttgatagtatcttaagtatgcatttatgggcttgccaatcatgtagtgcatgtattttggggccatgtttttggcatgct-----
||||| |  ||||||||||||||| | |  ||||| ||||||||||||||  | ||||||||||| ||||| |  | ||   || | |   |    |   |||      |    || | ||    ||   | ||   || | |  |    ||| |||| ||| ||  |     
AATGCATTGCGGCAGCAAAGATTTGTACGTGAAGTTACAATACAGTACAACCTCTGCAATGAACCTTGgtatgcta-gtattaattggcaaagtacaggctaatacaatagcattgtgttttaagatggagcagaaaatatctaat----ccaagtttgtggtatttttgtaa

upper sequence: PP1S55_201V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 5'ss of exon 8
AATGCGTACCGGCAGCAAAGATTTATGCAGGAAGTGACAATACAGTACAATTTATGCAATGAACCGTGgtaag--tcatgttaa---aactcgttgatagtatcttaagtatgcatttatgggcttgccaatcatgtagtgcatgtattttggggccatgtttttggcatgct
|||||||  ||||| ||||||||| | |  ||||| |||||||||||||| ||||| |||||||| ||||| |  |||  ||        | | | || |   ||| | |  | |  ||  |  ||           |  | | | |||  | |    |||||    ||    
AATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAACTTATGTAATGAACCTTGgtatgcttcaaatttctttgggtagcttattgctcctttaattcgtaagtagagaatttttggaagcaaatggaaggcattgagag----tgtttccaccaaat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67694058|gb|BJ954291.1|BJ954291
EST:     GATTTTATGCAGGAAGTGACAATACAGTACAATTTATGCAATGAACCGTG                         GGCTAAGTATTGCATGAACAACGTGGCTGACCGTGGGTTGAAGAAATCTCA
genomic: GA-TTTATGCAGGAAGTGACAATACAGTACAATTTATGCAATGAACCGTGgtaagtcatg ... ccctttacagGGCTAAGTATTGCATGAACAACGTGGCTGACCGTGGGTTGAAGAAATCTCA