1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCCTAATGAGCAATCTCGCACAGAGATTTTGAAAATCCATGCATCTGGCATTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtccctgttcttgtccgcatctcttggtttgtgtaccgttgtgaacgaatggaattgcttatctggcaacgggccatacaatgtttattgctt...
species | Physcomitrella patens |
transcript | PP1S47_46V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAG GGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTTEST: gi|162266639|gb|FC441999.1|FC441999
genomic: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtc ... ttgttcacagGGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTT
EST: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAG GGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTTEST: gi|37837457|gb|BJ595465.1|BJ595465
genomic: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtc ... ttgttcacagGGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTT
EST: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAG GGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTTEST: gi|37836411|gb|BJ594419.1|BJ594419
genomic: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtc ... ttgttcacagGGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTT
EST: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAG GGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTTEST: gi|162269526|gb|FC445082.1|FC445082
genomic: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtc ... ttgttcacagGGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTT
EST: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAG GGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTTEST: gi|37834916|gb|BJ592928.1|BJ592928
genomic: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtc ... ttgttcacagGGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTT
EST: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAG GGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTTEST: gi|208353233|gb|DC926158.1|DC926158
genomic: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtc ... ttgttcacagGGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTT
EST: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAG GGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTTEST: gi|37823384|gb|BJ581450.1|BJ581450
genomic: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtc ... ttgttcacagGGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTT
EST: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAG GGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTTEST: gi|37833453|gb|BJ591465.1|BJ591465
genomic: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtc ... ttgttcacagGGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTT
EST: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAG GGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTT
genomic: TTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtc ... ttgttcacagGGCTTCAACGGAGCTGATCTTCGCAACGTGTGCACTGAAGCGGGCATGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTAATGAGCAATCTCGCACAGAGATTTTGAAAATCCATGCATCTGGCATTACTAAGCATGGAGAGATTGATTATGAGGCTATTGTTAAACTTGCTGAGgtacagtgtccctgttcttgtccgcatctcttggtttgtgtaccgttgtgaacgaatggaattgcttatctggcaacgggccatacaatgtttattgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA