1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCACATCTGGACAGATGTGGACAAGGATCGGTCAGGAGACTTACCGTTTGTTTTTGAAGATGGATTTGGgtgagtaaatttgactatcatttcgtttttcttgaattttgttttgactcttggatctcgagattgccaatttagaaaacattttagcttcaattctgct...
species | Physcomitrella patens |
transcript | PP1S479_14V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GACAAGGATCGGTCAGGAGACTTACCGTTTGTTTTTGAAGATGGATTTGG GTTCGAAAAGTACGTTGATTATGCTCTAGACGTTCCTATGTATTTTGTCTAEST: gi|67725923|gb|BJ976182.1|BJ976182
genomic: GACAAGGATCGGTCAGGAGACTTACCGTTTGTTTTTGAAGATGGATTTGGgtgagtaaat ... tgtcatgcagGTTCGAAAAGTACGTTGATTATGCTCTAGACGTTCCTATGTATTTTGTCTA
EST: GAGACNTACCGTTTG-TTTTGAAGATGGA-TTGG GTTCGAAAAGTACGTTGATTATGCTCTAGACGTTCCTATGTATTTTGTCTAEST: gi|37840845|gb|BJ598853.1|BJ598853
genomic: GAGACTTACCGTTTGTTTTTGAAGATGGATTTGGgtgagtaaat ... tgtcatgcagGTTCGAAAAGTACGTTGATTATGCTCTAGACGTTCCTATGTATTTTGTCTA
EST: GAAGATGGATTTGG GTTCGAAAAGTACGTTGATTATGCTCTAGACGTTCCTATGTATTTTGTCTAEST: gi|162239290|gb|FC415389.1|FC415389
genomic: GAAGATGGATTTGGgtgagtaaat ... tgtcatgcagGTTCGAAAAGTACGTTGATTATGCTCTAGACGTTCCTATGTATTTTGTCTA
EST: GACAAGGATCGGTCAGGAGACTTACCGTTTGTTTTTGAAGATGGATTTGG GTTCGAAAAGTACGTTGATTATGCTCTAGACGTTCCTATGTATTTTGTCTA
genomic: GACAAGGATCGGTCAGGAGACTTACCGTTTGTTTTTGAAGATGGATTTGGgtgagtaaat ... tgtcatgcagGTTCGAAAAGTACGTTGATTATGCTCTAGACGTTCCTATGTATTTTGTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACATCTGGACAGATGTGGACAAGGATCGGTCAGGAGACTTACCGTTTGTTTTTGAAGATGGATTTGGgtgagtaaatttgactatcatttcgtttttcttgaattttgttttgactcttggatctcgagattgccaatttagaaaacattttagcttcaattctgct
- - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaca