Sequence
atgc intronic sequence ATGC exonic sequenceGGTATGTCAAGCGATTTTTGCATCCTGATGTGGTGGCACAGTATGAATATATCTTCATTTGGGATGAGGATCTTGATTTGACTCATTTCAATGCGCGGAGgtgagttacttctgtcataatttgttccggaagtctcagccaacttgtgagtccagaattgtgaaccgcatttacgactttaggatgtgcttttgcaacaataatgtgatacggctttaatataacgaaggctttctaacgaaaataaaataaaaaaaactgcag
Basic information
species | Physcomitrella patens |
transcript | PP1S448_20V6.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S448_20V6.3 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT3G27470.1 (Arabidopsis thaliana), 5'ss of exon 8
GGTATGTCAAGCGATTTTTGCATCCTGATGTGGTGGCACAGTATGAATATATCTTCATTTGGGATGAGGATCTTGATTTGACTCATTTCAATGCGCGGAGgtgagttacttctgtcataatttgttccggaagtctcagccaacttgtgagtccagaattg--tgaaccgcatttacgactttaggatgtgcttttgcaacaataatgtgatacggctttaatataacgaaggctttctaacgaaaataaaataaaaaaaactgcag
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GGTACGCTAAGCGATTTCTTCATCCTGACATAGTTGCCCCCTATGAATATATCTTCATATGGGATGAGGATCTTGGCGTGGAACACTTTGATTCGGAAAAgtatgtttttgaagcttggacttccttttaatagacattccaggttatgaagattaaatttcttggacag-------------------------------------------------------------------------------------------------
upper sequence: PP1S448_20V6.3 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT3G26440.1 (Arabidopsis thaliana), 5'ss of exon 8
GGTATGTCAAGCGATTTTTGCATCCTGATGTGGTGGCACAGTATGAATATATCTTCATTTGGGATGAGGATCTTGATTTGACTCATTTCAATGCGCGGAGgtgagt----tacttctgtc-ataatttgttccggaagtctcagccaacttgtgagtccagaattgtgaaccgcatttacgactttaggatgtgcttttgcaacaataatgtgatacggctttaatataacgaaggctttctaacgaaaataaaataaaaaaaactgcag
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GGTATGCTAAAAGGTTTCTGCATCCTGATATCATAGCACCATATGAATATATATTCATTTGGGATGAAGATCTTGGCGTTGAAAACTTCGACGCAGAAGAgtaagtactctgcttcttttgataatataatcagaaactgttatgaaatgttttc-tacattattgcag-----------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162177786|gb|FC354620.1|FC354620EST: ATCTTCATTTGGGATGAGGATCTTGATTTGACTCATTTCAATGCGCGGAG GTACCTGGAGCTCGTCGAANAGCATGGTCTCGAAGTTTCACAGCCGTCGCT
genomic: ATCTTCATTTGGGATGAGGATCTTGATTTGACTCATTTCAATGCGCGGAGgtgagttact ... aaaactgcagGTACCTGGAGCTCGTCGAAAAGCATGGTCTCGAAGTTTCACAGCCGTCGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTATGTCAAGCGATTTTTGCATCCTGATGTGGTGGCACAGTATGAATATATCTTCATTTGGGATGAGGATCTTGATTTGACTCATTTCAATGCGCGGAGgtgagttacttctgtcataatttgttccggaagtctcagccaacttgtgagtccagaattgtgaaccgcatttacgactttaggatgtgcttttgcaacaataatgtgatacggctttaatataacgaaggctttctaacgaaaataaaataaaaaaaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT