Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctcaaaactattgtcgcttgttatcatccgtccgttgcagtcgtttgacttattcctcttcgtgcacatttcagtcacaagcatccttatcttcatcttatctacttgctctatctttcattgtaaaggggcatggtttcttcccttagtctccgaagttctcatcacttctctgatatgcag

Basic information

species Physcomitrella patens
transcript PP1S43_170V6.4
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37828329|gb|BJ586341.1|BJ586341
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37825949|gb|BJ584015.1|BJ584015
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37830025|gb|BJ588037.1|BJ588037
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|208385891|gb|DC956729.1|DC956729
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37829204|gb|BJ587216.1|BJ587216
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37821234|gb|BJ579300.1|BJ579300
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|18333273|gb|BJ165287.1|BJ165287
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37822057|gb|BJ580123.1|BJ580123
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37832577|gb|BJ590589.1|BJ590589
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37821986|gb|BJ580052.1|BJ580052
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37835634|gb|BJ593646.1|BJ593646
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37835747|gb|BJ593759.1|BJ593759
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|162188517|gb|FC365115.1|FC365115
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37835470|gb|BJ593482.1|BJ593482
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37829644|gb|BJ587656.1|BJ587656
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37850005|gb|BJ608013.1|BJ608013
EST:     GGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: GGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|162194361|gb|FC369740.1|FC369740
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|162156232|gb|FC332048.1|FC332048
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37846743|gb|BJ604751.1|BJ604751
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|162155711|gb|FC331324.1|FC331324
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|18336666|gb|BJ168689.1|BJ168689
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37827259|gb|BJ585271.1|BJ585271
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|162171557|gb|FC347498.1|FC347498
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|162154485|gb|FC330487.1|FC330487
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37824338|gb|BJ582404.1|BJ582404
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|162226906|gb|FC403094.1|FC403094
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|162163482|gb|FC340016.1|FC340016
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
EST: gi|37821105|gb|BJ579171.1|BJ579171
EST:     ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAG                         GTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA
genomic: ACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctca ... tgatatgcagGTGTGAGATGAAAGATGTCTTGCTGGAAATAGATCGTATCCTTAGACCGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGCTGGACTTTTTACGGCTGAAAGCCACAGgtatatctcaaaactattgtcgcttgttatcatccgtccgttgcagtcgtttgacttattcctcttcgtgcacatttcagtcacaagcatccttatcttcatcttatctacttgctctatctttcattgtaaaggggcatggtttcttcccttagtctccgaagttctcatcacttctctgatatgcag

- - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA