1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAAGTATTTTGGGGAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAGgtgaaagccccgtttcgtactccgtaattgcattccgtagatactcgagattgaagttgtgaaacgcatgcgtagaaatctgtaaacttatagaaactat...
species | Physcomitrella patens |
transcript | PP1S42_152V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAG ATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATCEST: gi|37833839|gb|BJ591851.1|BJ591851
genomic: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAGgtgaaagccc ... ctcttttcagATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATC
EST: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAG ATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATCEST: gi|37825973|gb|BJ584039.1|BJ584039
genomic: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAGgtgaaagccc ... ctcttttcagATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATC
EST: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAG ATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATCEST: gi|37827183|gb|BJ585195.1|BJ585195
genomic: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAGgtgaaagccc ... ctcttttcagATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATC
EST: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAG ATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATCEST: gi|37834361|gb|BJ592373.1|BJ592373
genomic: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAGgtgaaagccc ... ctcttttcagATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATC
EST: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAG ATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATCEST: gi|15327469|gb|BI488223.1|BI488223
genomic: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAGgtgaaagccc ... ctcttttcagATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATC
EST: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAG ATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATC
genomic: GAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAGgtgaaagccc ... ctcttttcagATTGCCTTTGTAGAAGACAAGCAACTCGAGAGCAGATTGCGAGATGAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAAGTATTTTGGGGAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCACGAGGGAAAAGgtgaaagccccgtttcgtactccgtaattgcattccgtagatactcgagattgaagttgtgaaacgcatgcgtagaaatctgtaaacttatagaaactat
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG