1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTTTTGTTGTGGCGTCGCGCTGTTCCACCAGAAAAAATGACTCGTTATGGTCTGACAGCTTTTTCTATGACTTTGAATGAGATCACGCCTGGGCTTCGGgtaagcacctgaaatgttggggcatatatatcgtgggatttcttatggttttaaacagacatttgattagtaggcatcagacttccgcagtttatttccgaggttgagtaaaatgacaaattgtcagtttccgtgtacttatggatggtctttgttgtgaag
species | Physcomitrella patens |
transcript | PP1S427_40V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTCTGACAGCTTTTTCTATGACTTTGAATGAGATCACGCCTGGGCTTCGG GAAAAGTTGCCACCTACAGATTCAAGGTTGAGACCCGATCAGAAACATTTAEST: gi|162190844|gb|FC368042.1|FC368042
genomic: GTCTGACAGCTTTTTCTATGACTTTGAATGAGATCACGCCTGGGCTTCGGgtaagcacct ... tgttgtgaagGAAAAGTTGCCACCTACAGATTCAAGGTTGAGACCCGATCAGAAACATTTA
EST: GTCTGACAGCTTTTTCTATGACTTTGAATGAGATCACGCCTGGGCTTCGG GAAAAGTTGCCACCTACAGATTCAAGGTTGAGACCCGATCAGAAACATTTAEST: gi|162168971|gb|FC345653.1|FC345653
genomic: GTCTGACAGCTTTTTCTATGACTTTGAATGAGATCACGCCTGGGCTTCGGgtaagcacct ... tgttgtgaagGAAAAGTTGCCACCTACAGATTCAAGGTTGAGACCCGATCAGAAACATTTA
EST: GTCTGACAGCTTTTTCTATGACTTTGAATGAGATCACGCCTGGGCTTCGG GAAAAGTTGCCACCTACAGATTCAAGGTTGAGACCCGATCAGAAACATTTA
genomic: GTCTGACAGCTTTTTCTATGACTTTGAATGAGATCACGCCTGGGCTTCGGgtaagcacct ... tgttgtgaagGAAAAGTTGCCACCTACAGATTCAAGGTTGAGACCCGATCAGAAACATTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTTGTTGTGGCGTCGCGCTGTTCCACCAGAAAAAATGACTCGTTATGGTCTGACAGCTTTTTCTATGACTTTGAATGAGATCACGCCTGGGCTTCGGgtaagcacctgaaatgttggggcatatatatcgtgggatttcttatggttttaaacagacatttgattagtaggcatcagacttccgcagtttatttccgaggttgagtaaaatgacaaattgtcagtttccgtgtacttatggatggtctttgttgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA