Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTACTCATTGCAATGTGTTAGCATACAGTAGCAGCAAGGGTTCCATTCGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACACTCTAAAGTgtaagtgatttttttcctgtttccatcgtatggtttcatggcacagttttttcttttgttggaatgtttcaatagagtaagtaattttgaacgtattgtg...

Basic information

species Physcomitrella patens
transcript PP1S425_2V6.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S425_2V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os06g36770.2 (Oryza sativa), 5'ss of exon 8
ATCCTACTCATTGCAATGTGTTAGCATACAGTAGCAGCAAGGGTTCCATTCGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACACTCTAAAGTgtaagtgatttttttcctg--tttccatcgtatggtttcatggcacagttttttcttttgttg-gaatgtttcaatagagtaagtaattttgaacgtattgtg-------------------------------------------------------------------
| || |||||||| |||    | || || || ||    |||||||| || |||||||||||| |||| |||||||| ||||||||    || || ||  ||| ||| |||  | |  ||  |||     | |   ||| ||      ||  |     | || | | |  | |    |  ||  | | ||  |   | ||                                                                       
ACCCAACTCATTGTAATACACTGGCCTATAGCAGTTCAAAGGGTTCTATCCGACTCATTGATCTGCGACAATCAGCTTTGTGTGACAACCATTCCAAGATgttagtaattcatcttatgccttttacctgcaacattttatccgtgtgtactggaggtagtcgtggacttcttttgacggttgggacttggggctgcataagattctctattctatactagtaatagaatgtcacaatatcagcatgagataacaagaacctttaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162150294|gb|FC326379.1|FC326379
EST:     CGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACACTCTAAAGT                         GTTTGAGGAGACTGATCCCTCTGGATCAAGGTCTTTTTTCACAGAAATCAT
genomic: CGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACACTCTAAAGTgtaagtgatt ... gtggttgcagGTTTGAGGAGACTGATCCCTCTGGATCAAGGTCTTTTTTCACAGAAATCAT