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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTACTCATTGCAATGTGTTAGCATACAGTAGCAGCAAGGGTTCCATTCGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACACTCTAAAGTgtaagtgatttttttcctgtttccatcgtatggtttcatggcacagttttttcttttgttggaatgtttcaatagagtaagtaattttgaacgtattgtg...

Basic information

species Physcomitrella patens
transcript PP1S425_2V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S425_2V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os06g36770.2 (Oryza sativa), 5'ss of exon 8
ATCCTACTCATTGCAATGTGTTAGCATACAGTAGCAGCAAGGGTTCCATTCGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACACTCTAAAGTgtaagtgatttttttcctg--tttccatcgtatggtttcatggcacagttttttcttttgttg-gaatgtttcaatagagtaagtaattttgaacgtattgtg-------------------------------------------------------------------
| || |||||||| |||    | || || || ||    |||||||| || |||||||||||| |||| |||||||| ||||||||    || || ||  ||| ||| |||  | |  ||  |||     | |   ||| ||      ||  |     | || | | |  | |    |  ||  | | ||  |   | ||                                                                       
ACCCAACTCATTGTAATACACTGGCCTATAGCAGTTCAAAGGGTTCTATCCGACTCATTGATCTGCGACAATCAGCTTTGTGTGACAACCATTCCAAGATgttagtaattcatcttatgccttttacctgcaacattttatccgtgtgtactggaggtagtcgtggacttcttttgacggttgggacttggggctgcataagattctctattctatactagtaatagaatgtcacaatatcagcatgagataacaagaacctttaaacag