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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGGATTGGAGTACATTCACGAGCACACGAAACCGAAATACATTCACCGAGATATCAAATCCGCCAACATACTCCTTGACAAGCACTATCATGCGAAGgtttagggctctcgattccctcaaaacgttgcatccctgctgctttatctcccgtgattgtctgaattgacacattctaggagtcgatggattcgaaacactcaatgcggcgctgatgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S41_280V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S41_280V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ05659 (Selaginella moellendorffii), 5'ss of exon 6
ACGAGGATTGGAGTACATTCACGAGCACACGAAACCGAAATACATTCACCGAGATATCAAATCCGCCAACATACTCCTTGACAAGCACTATCATGCGAAGgtttagggctctcgattccctcaaaacgttgcatccctgctgctttatctcccgtgattgtctgaattgacacattctaggagtcgatggattcgaaacactcaatgcggcgctgatgtgtgcag
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AAGAGGGCTGGAGTACATACACGAGCACACAAAGCCAACATATATTCACCGAGACATTAAATCCACCAACATTCTCATCGATAAAAATCTTCATGCCAAGgtactgtatgtacaagatgct----atgcaagacttcaagagctc--cttttggtaacag-----------------------------------------------------------------