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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTGCTTGATCGAGTCAACACCGAGGCGCAATCCACCTCAGACCGCCCTTCTCTGTTCCTATATTCGGGTCACGATGCCACTATCATGCCACTCTCAGgtattcaactcatccatctcatcaattacatctacttccttgcgcactgtaccgccagtttagagggggcccttaaaataaattgtcgaatttatgttagttttcggatgtatggcag

Basic information

species Physcomitrella patens
transcript PP1S41_144V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18332653|gb|BJ164666.1|BJ164666
EST:     TTCTCTGTTCCTATATTCGGGTCACGATGCCACTATCATGCCACTCTCAG                         TGGCATTGGGTTTGCCTTGGACGGAATGGCCTGGCTACACATCCTCCATCT
genomic: TTCTCTGTTCCTATATTCGGGTCACGATGCCACTATCATGCCACTCTCAGgtattcaact ... tgtatggcagTGGCATTGGGTTTGCCTTGGACGGAATGGCCTGGCTACACATCCTCCATCT
EST: gi|162182181|gb|FC358196.1|FC358196
EST:     TTCTCTGTTCCTATATTCGGGTCACGATGCCACTATCATGCCACTCTCAG                         TGGCATTGGGTTTGCCTTGGACGGAATGGCCTGGCTACACATCCTCCATCT
genomic: TTCTCTGTTCCTATATTCGGGTCACGATGCCACTATCATGCCACTCTCAGgtattcaact ... tgtatggcagTGGCATTGGGTTTGCCTTGGACGGAATGGCCTGGCTACACATCCTCCATCT