Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCAGCAGTGTGTGTAATCGTTGATAAGgtcttgttgcatacccttttctttctttggggatcacaagtttctgttgcattttctcgcacaccgactgttttctttgtcagcagatttggctggacgt...

Basic information

species Physcomitrella patens
transcript PP1S407_7V6.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184196|gb|FC360463.1|FC360463
EST:     ATGACATCCAGCCTGATTCCTTTGCAGCAGTGTGTGTAATCGTTGATAAG                         TTGGATAAGTTACCGAGGGAGGAAATCGAGAGTGAGCTGGACAAGGCTGGC
genomic: ATGACATCCAGCCTGATTCCTTTGCAGCAGTGTGTGTAATCGTTGATAAGgtcttgttgc ... cattcatcagTTGGATAAGTTACCGAGGGAGGAAATCGAGAGTGAGCTGGACAAGGCTGGC
EST: gi|208379607|gb|DC927104.1|DC927104
EST:     ATGACATCCAGCCTGATTCCTTTGCAGCAGTGTGTGTAATCGTTGATAAG                         TTGGATAAGTTACCGAGGGAGGAAATCGAGAGTGAGCTGGACAAGGCTGGC
genomic: ATGACATCCAGCCTGATTCCTTTGCAGCAGTGTGTGTAATCGTTGATAAGgtcttgttgc ... cattcatcagTTGGATAAGTTACCGAGGGAGGAAATCGAGAGTGAGCTGGACAAGGCTGGC
EST: gi|67726712|gb|BJ976971.1|BJ976971
EST:     ATGACATCCAGCCTGATTCCTTTGCAGCAGTGTGTGTAATCGTTGATAAG                         TTGGATAAGTTACCGAGGGAGGAAATCGAGAGTGAGCTGGACAAGGCTGGC
genomic: ATGACATCCAGCCTGATTCCTTTGCAGCAGTGTGTGTAATCGTTGATAAGgtcttgttgc ... cattcatcagTTGGATAAGTTACCGAGGGAGGAAATCGAGAGTGAGCTGGACAAGGCTGGC
EST: gi|100362562|gb|BY947415.1|BY947415
EST:     ATGACATCCAGCCTGATTCCTTTGCAGCAGTGTGTGTAATCGTTGATAAG                         TTGGATAAGTTACCGAGGGGAGGAA-TCGAGAGTGAGCTGGAC
genomic: ATGACATCCAGCCTGATTCCTTTGCAGCAGTGTGTGTAATCGTTGATAAGgtcttgttgc ... cattcatcagTTGGATAAGTTACCGAGGG-AGGAAATCGAGAGTGAGCTGGAC