Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgctttgtatatagtctatttaatggatattggtttagaaattgtttttgatcaatctaggcatacttattttggttttgtggaactaaattgtatacttcaaagcctgtgaaaagttacacattgagttctggagtttaaagttatttatggagtgtaaacttattatggcag

Basic information

species Physcomitrella patens
transcript PP1S3_353V6.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208349639|gb|DC922029.1|DC922029
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208400784|gb|DC925064.1|DC925064
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208396009|gb|DC915769.1|DC915769
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAGG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162219036|gb|FC394931.1|FC394931
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162242107|gb|FC414475.1|FC414475
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208375064|gb|DC956432.1|DC956432
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162234770|gb|FC410595.1|FC410595
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162212517|gb|FC388493.1|FC388493
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208381938|gb|DC923448.1|DC923448
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|18341156|gb|BJ173189.1|BJ173189
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|18337921|gb|BJ169945.1|BJ169945
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162152466|gb|FC328029.1|FC328029
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208384341|gb|DC928092.1|DC928092
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162174027|gb|FC350542.1|FC350542
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162225092|gb|FC401716.1|FC401716
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|37848110|gb|BJ606118.1|BJ606118
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208366354|gb|DC947564.1|DC947564
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162160439|gb|FC337440.1|FC337440
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|37826154|gb|BJ584166.1|BJ584166
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162198043|gb|FC372070.1|FC372070
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|37832850|gb|BJ590862.1|BJ590862
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|37831516|gb|BJ589528.1|BJ589528
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|67696778|gb|BJ957011.1|BJ957011
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208352003|gb|DC925812.1|DC925812
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|37821601|gb|BJ579667.1|BJ579667
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|37851324|gb|BJ609332.1|BJ609332
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162196447|gb|FC373047.1|FC373047
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162234771|gb|FC410596.1|FC410596
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208398319|gb|DC920718.1|DC920718
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162277339|gb|FC453145.1|FC453145
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|37832471|gb|BJ590483.1|BJ590483
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162196446|gb|FC373046.1|FC373046
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162198044|gb|FC372071.1|FC372071
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|67578813|gb|BJ950980.1|BJ950980
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162207902|gb|FC383608.1|FC383608
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208356230|gb|DC918428.1|DC918428
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|37853129|gb|BJ611137.1|BJ611137
EST:     CAGAACGCGTTCCAGTTTTACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208352941|gb|DC921811.1|DC921811
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGATTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162242106|gb|FC414474.1|FC414474
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208386602|gb|DC952783.1|DC952783
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|37835063|gb|BJ593075.1|BJ593075
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162190689|gb|FC367575.1|FC367575
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162199210|gb|FC374630.1|FC374630
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162269380|gb|FC445248.1|FC445248
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|18333016|gb|BJ165030.1|BJ165030
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162171822|gb|FC348972.1|FC348972
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162207901|gb|FC383607.1|FC383607
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208381682|gb|DC919724.1|DC919724
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|162152467|gb|FC328030.1|FC328030
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAA
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAA
EST: gi|162225093|gb|FC401717.1|FC401717
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
EST: gi|208352552|gb|DC918261.1|DC918261
EST:     CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG                         GCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG
genomic: CAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgcttt ... attatggcagGCTGTCATTCATAAAGAGAACAATTTCCAACAACCTGGAGTCAGGTTCCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAGgtaatgctttgtatatagtctatttaatggatattggtttagaaattgtttttgatcaatctaggcatacttattttggttttgtggaactaaattgtatacttcaaagcctgtgaaaagttacacattgagttctggagtttaaagttatttatggagtgtaaacttattatggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA