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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAGgtctttaactttatttttggaataagtggatttcatgcatcgcttggttttgatatagttttgctgaccattgggtcttacttgcttggtgtgattttgtagtgtaggtttttgtgcagataatgcttgttgaagcatgaaatgtttgcacgttaactgtctgttattggattgtaaattgtgcag

Basic information

species Physcomitrella patens
transcript PP1S39_248V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100360990|gb|BY946858.1|BY946858
EST:     AAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAG                         TCCCATCA-TATTTTGAAGGCTCATGGACAGAGTGCCAAAGAGAGTTATCT
genomic: AAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAGgtctttaact ... aattgtgcagTCC-ATCAATATTTTGAAGGCTCATGGACAGAGTGCCAAAGAGAGTTATCT
EST: gi|208347324|gb|DC909715.1|DC909715
EST:     AAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAG                         TCCATCAATATTTTGAAGGCTCATGGACAGAGTGCCAAAGAGAGTTATCTT
genomic: AAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAGgtctttaact ... aattgtgcagTCCATCAATATTTTGAAGGCTCATGGACAGAGTGCCAAAGAGAGTTATCTT
EST: gi|100417876|gb|BY993228.1|BY993228
EST:     AAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAG                         TCCATCAATATTTTGAAGGCTCATGGACAGAGTGCCAAAGAGAGTTATCTT
genomic: AAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAGgtctttaact ... aattgtgcagTCCATCAATATTTTGAAGGCTCATGGACAGAGTGCCAAAGAGAGTTATCTT
EST: gi|208360034|gb|DC934923.1|DC934923
EST:     AAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAG                         TCCATCAATATTTTGAAGGCTCATGGACAGAGTGCCNAANAGAGTTATCTC
genomic: AAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAGgtctttaact ... aattgtgcagTCCATCAATATTTTGAAGGCTCATGGACAGAGTGCCAAAGAGAGTTATCTT
EST: gi|67719559|gb|BJ969818.1|BJ969818
EST:     AAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAG                         TCCATCAATATTTTGAAGGCTCATGGACAGAGTGCCAAAGAGAGTTATCTT
genomic: AAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAGgtctttaact ... aattgtgcagTCCATCAATATTTTGAAGGCTCATGGACAGAGTGCCAAAGAGAGTTATCTT