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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCGgtgaggctcttctcccccccccccctccccccccttctcttgatctgtagttgccattcctgttttggcggttgggagcgactgttttgcttttgagctatattttgattctgtgtaatttttgtacatgcag

Basic information

species Physcomitrella patens
transcript PP1S360_49V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S360_49V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA08G21570.1 (Glycine max), 5'ss of exon 8
CTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCGgtgaggctcttctcccccccccccctccccccccttctcttgatctgtagttgccattcctgttttggcggttgggagcgactgttttgcttttgagctatattttgattctgtgtaatttttgtacatgcag
|||||   ||||||||| ||||||| ||   |||||| ||||||||||||||||||||||| ||| |||                            |   || | | ||      ||||  |   || |||  || |||         ||| ||| | || | || |||    | | | |  |                
CTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAGgta-------------tttataattgaaatcggattatgtagaa--aatgttgatacaactatttatgcagtttt------ttgtattgatattaacctgtatggaaaatattttcag---------------

upper sequence: PP1S360_49V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 8
CTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCGgtgaggctcttctcccccccccccctccccccccttctcttgatctgtagttgccattcctgttttggcggttgggagcgactgttttgcttttgagctatattttgattctgtgtaatttttgtacatgcag
|||||   ||||||||| ||||||| ||   |||||| ||||||||||||||||| ||||| ||| ||||    | |               ||          | || || |||   |     | | |||||     |||  |   |||    ||  |   |  ||| ||  |                          
CTACTAAGTGGAGGGATAGTACAACGGGCTCGCATGTGGAATATGACCAAAGGCCAGATGTTTTCAGgtg----tttataattgaatttggatcatgtagaaaatgtttatatgt--ctatttatacagttttttgtattgatattaact----tgtatggaaaatattttcag--------------------------