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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTTGAAGgtgagtacctttcagtctgaactgagggtttgatttcgtgagtggatctggattctagtttcacttcgatgttgaccatgattatgttgtagatcatgcag

Basic information

species Physcomitrella patens
transcript PP1S31_251V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162182952|gb|FC359816.1|FC359816
EST:     CTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTTGAAGATCATGCAG                 
genomic: CTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTT---G---A---AGgtgagtacct ... ga
EST: gi|18341698|gb|BJ173733.1|BJ173733
EST:     CTGTTCAGTTAGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTTGAAG                         ATTAGCAGTAACACAATGGCGATATCAAAGCATGAAGAAGGAAGGCAAGGA
genomic: CTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTTGAAGgtgagtacct ... gatcatgcagATTAGCAGTAACACAATGGCGATATCAAAGCATGAAGAAGGAAGGCAAGGA
EST: gi|162274762|gb|FC450815.1|FC450815
EST:     AACACTGTTTGCATCCAGTGCGTTTTGAAG                         ATTAGCAGTAACACAATGGCGATATCAAAGCATGAAGAAGGAAGGCAAGGA
genomic: AACACTGTTTGCATCCAGTGCGTTTTGAAGgtgagtacct ... gatcatgcagATTAGCAGTAACACAATGGCGATATCAAAGCATGAAGAAGGAAGGCAAGGA
EST: gi|37830647|gb|BJ588659.1|BJ588659
EST:     CCAGTGCGTTTTGAAG                         ATTAGCAGTAACACAATGGCGATATCAAAGCATGAAGAAGGAAGGCAAGGA
genomic: CCAGTGCGTTTTGAAGgtgagtacct ... gatcatgcagATTAGCAGTAACACAATGGCGATATCAAAGCATGAAGAAGGAAGGCAAGGA
EST: gi|162274763|gb|FC450816.1|FC450816
EST:     AACACTGGTTTGCATCCAGTGCGTTTTGAAG                         ATTAGCAGTAACACAATGGCGATATCAAAGCATGAAGAAGGAAGGCAAGGA
genomic: AACACT-GTTTGCATCCAGTGCGTTTTGAAGgtgagtacct ... gatcatgcagATTAGCAGTAACACAATGGCGATATCAAAGCATGAAGAAGGAAGGCAAGGA
EST: gi|162156789|gb|FC333601.1|FC333601
EST:     CTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTTGAAGATCATGCAG                 
genomic: CTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTT---G---A---AGgtgagtacct ... ga
EST: gi|162242460|gb|FC418959.1|FC418959
EST:     CTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTTGAAGATCATGCAG                 
genomic: CTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTT---G---A---AGgtgagtacct ... ga
EST: gi|162209785|gb|FC385719.1|FC385719
EST:     CTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTTGAAG                         ATTAGCAGTAACACAATGGCGATATCAAAGCATGAAGAAGGAAGGCAAGGA
genomic: CTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTTGAAGgtgagtacct ... gatcatgcagATTAGCAGTAACACAATGGCGATATCAAAGCATGAAGAAGGAAGGCAAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCCAGTGCGTTTTGAAGgtgagtacctttcagtctgaactgagggtttgatttcgtgagtggatctggattctagtttcacttcgatgttgaccatgattatgttgtagatcatgcag

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