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GTAGATCCATCAGGATCATACTTCTCATGGAAGGCATCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctttccatacgttgcactctgttttcgattctgtagtctacgatgtggtagaatgcaggatgagttttgaacgagacgattcgtgtcatatttaatatgagatagtgactcattcgagaggcatactgttacaagcag
species | Physcomitrella patens |
transcript | PP1S2_595V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAANAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGACEST: gi|162267261|gb|FC442673.1|FC442673
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGACEST: gi|208371355|gb|DC952116.1|DC952116
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGACEST: gi|162157425|gb|FC333501.1|FC333501
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGACEST: gi|162182796|gb|FC359738.1|FC359738
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGACEST: gi|37840995|gb|BJ599003.1|BJ599003
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGACEST: gi|162182797|gb|FC359739.1|FC359739
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTEST: gi|162267260|gb|FC442672.1|FC442672
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACT
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGACEST: gi|37840717|gb|BJ598725.1|BJ598725
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGACEST: gi|18335705|gb|BJ167726.1|BJ167726
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGACEST: gi|208395624|gb|DC920242.1|DC920242
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGACEST: gi|208349216|gb|DC906358.1|DC906358
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAANG -TATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAEST: gi|37842327|gb|BJ600335.1|BJ600335
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGA
EST: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG GTATTCTGATGACATGGAACTCGAAGATGCTATTCACANTGNGATTNTGAC
genomic: TCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctt ... ttacaagcagGTATTCTGATGACATGGAACTCGAAGATGCTATTCACACTGCGATTCTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGATCCATCAGGATCATACTTCTCATGGAAGGCATCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctttccatacgttgcactctgttttcgattctgtagtctacgatgtggtagaatgcaggatgagttttgaacgagacgattcgtgtcatatttaatatgagatagtgactcattcgagaggcatactgttacaagcag
- - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA