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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATGCTCTGGACACTCCAGCCTCGGCTAGGCACAAGCGTGGTTGTAACTGCAAAAAATCACTTTGTCTCAAAAAGTACTGCGAGTGTTACCAGgtacttactatccttatgaatgatgagtttaactgtttttcctgttgtgtagaacctttatctcatcaaattcctaacaaagtgccattgtggcggacag

Basic information

species Physcomitrella patens
transcript PP1S29_305V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S29_305V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ22725 (Selaginella moellendorffii), 5'ss of exon 5
----GATGATGCTCTGGACACTCCAGCCTCGGCTAGGCACAAGCGTGGTTGTAACTGCAAAAAATCACTTTGTCTCAAAAAGTACTGCGAGTGTTACCAGgtacttactatccttatgaatgatgagtttaactgtttttcctgt-tgtgtagaacctttatctcatcaaattcctaacaaagtgccattgtggcggacag
        ||   |  || ||  |||  || |||||||||||||| || ||||||||||| || || || ||||| |||||||||||||| || ||||||||||     |  |   | ||   |   | |   | |  || || | || |       || ||||    |||                              
GCAGCCCAATTGCCCCGATACAACAGGATCTGCTAGGCACAAGCGCGGCTGTAACTGCAAGAAGTCGCTGTGTCTGAAAAAGTACTGCGAATGCTACCAGgtac-----aatcaagtcaa--gtctttctgcttatacttactatgtgcgcttggttttcatctgtctaaag-----------------------------

upper sequence: PP1S29_305V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ04883 (Selaginella moellendorffii), 5'ss of exon 2
----GATGATGCTCTGGACACTCCAGCCTCGGCTAGGCACAAGCGTGGTTGTAACTGCAAAAAATCACTTTGTCTCAAAAAGTACTGCGAGTGTTACCAGgtacttactatccttatgaatgatgagtttaactgtttttcctgttgtgtagaacctttatctcatcaaattcctaacaaagtgccattgtggcggacag
        ||   |  || ||  |||  || |||||||||||||| || ||||||||||| || || || ||||| |||||||||||||| || ||||||||||   | |  |   |      |  | |||  |  ||  | ||| | |       || ||||    |||                              
GCAGCCCAATTGCCCCGATACAACAGGATCTGCTAGGCACAAGCGCGGCTGTAACTGCAAGAAGTCGCTGTGTCTGAAAAAGTACTGCGAATGCTACCAGgtacaatcaagtcaagt---ctttctgctta--tacttaccatgt-gcgcttggttttcatctgtctaaag-----------------------------