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CTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCTCAGCCTCTACATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacgactgtctcaaatattagtgttatgttttcaaaagagtcactttctgtgtgcacccattgaagtcatgatcacatctgtgtgatgcagctg...
species | Physcomitrella patens |
transcript | PP1S29_256V6.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACGTCTCACTTTTGAAGTAC-TTGCT-CGNNATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|67718262|gb|BJ968521.1|BJ968521
genomic: ACGTCTCACTTTTGAAGTACTTTGCTCCG--ATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGANAAGATTATCCCTGEST: gi|18327390|gb|BJ159392.1|BJ159392
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|162182768|gb|FC359515.1|FC359515
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|67727192|gb|BJ977451.1|BJ977451
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|67726751|gb|BJ977010.1|BJ977010
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|162169758|gb|FC345295.1|FC345295
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACEST: gi|162176349|gb|FC353534.1|FC353534
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCAC
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAEST: gi|100403476|gb|BY991219.1|BY991219
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGA
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAAACCAG GTGGGTCTGCACTTTCTCTTACTTACTTGGCGTCTGAEST: gi|162181163|gb|FC357608.1|FC357608
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGA
EST: GCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|37824766|gb|BJ582832.1|BJ582832
genomic: GCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: TTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCAC-TTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|67727852|gb|BJ978111.1|BJ978111
genomic: TTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|162223700|gb|FC399772.1|FC399772
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|19789330|gb|BQ041244.1|BQ041244
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|162176594|gb|FC353063.1|FC353063
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|18333553|gb|BJ165568.1|BJ165568
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: GCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|67720690|gb|BJ970949.1|BJ970949
genomic: GCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: TGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTNGGCGTCTGAGAAGATTATCCCTGEST: gi|208375034|gb|DC944815.1|DC944815
genomic: TGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: GAAGTAC-TTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|67720235|gb|BJ970494.1|BJ970494
genomic: GAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: TGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTGEST: gi|162241271|gb|FC416902.1|FC416902
genomic: TGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
EST: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAG GTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
genomic: ATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacg ... atggattcagGTGGTTCTGCACTTTCTCTTACTTACTTGGCGTCTGAGAAGATTATCCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCTCAGCCTCTACATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGATCATGAACCCAGgtacggaacgactgtctcaaatattagtgttatgttttcaaaagagtcactttctgtgtgcacccattgaagtcatgatcacatctgtgtgatgcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG