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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGTTCCCTATCGAATCGAAGGGCCGCCGAAAGAAACTTCGCGAGGTTGGGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggctgtgtgcagaatgcacagggtttgcagagggtcgtagttgttgcttcacttggggtggtgtggttgcatgtgtgtgtagagcgatacgatgacgcgatggcaatgtgtgtgcgaaaggtggggggttgtggagcattgtggtttggtgggtgttggactgatgcgtgggtggatgcgacag

Basic information

species Physcomitrella patens
transcript PP1S295_30V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208354202|gb|DC957422.1|DC957422
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|208392737|gb|DC953634.1|DC953634
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|100414507|gb|BY992807.1|BY992807
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|162260165|gb|FC436300.1|FC436300
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTAATCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|208363026|gb|DC946909.1|DC946909
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|208367886|gb|DC950953.1|DC950953
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|162278111|gb|FC453930.1|FC453930
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGGATTTGGACGTTCTGTACCA
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGG-ATTTGGACGTTCTGTACCA
EST: gi|208375008|gb|DC956404.1|DC956404
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|22492481|gb|BU052404.1|BU052404
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|208358588|gb|DC946549.1|DC946549
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|208396077|gb|DC924543.1|DC924543
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|208374777|gb|DC932046.1|DC932046
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTNCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|162278110|gb|FC453929.1|FC453929
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|208349948|gb|DC913656.1|DC913656
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|208361176|gb|DC954282.1|DC954282
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|208399342|gb|DC924772.1|DC924772
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|37845291|gb|BJ603299.1|BJ603299
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|22491854|gb|BU051777.1|BU051777
EST:     ATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: ATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
EST: gi|162265852|gb|FC442439.1|FC442439
EST:     GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATC                         ATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT
genomic: GGTGTGTGACGGCTATTTGTTTCATATGCTTCACCATCAGATCTTTCATCgtaagtggct ... gatgcgacagATGGCGTTCTCGGTATTCAACAAAGCAATGGATTTGGACGTTCTGTACCAT