1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGGTTCAGAAATTGTGAGGCGGGCTTTGAGTTACCCTTTGAAGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctttctggattttgattgttctggacctcgacgagttactgttcttggattgtgtctgaatttttctcccttatgtgtgaagcttgataatgaatcagtttattcgttttttgaaaattaattcaaaaattgttatttgattgacag
species | Physcomitrella patens |
transcript | PP1S276_75V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|37847188|gb|BJ605196.1|BJ605196
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162176319|gb|FC353504.1|FC353504
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162270365|gb|FC447065.1|FC447065
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGTTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162170396|gb|FC346788.1|FC346788
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162157273|gb|FC332907.1|FC332907
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162178479|gb|FC354203.1|FC354203
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|67692782|gb|BJ953015.1|BJ953015
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162169599|gb|FC345539.1|FC345539
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|37828443|gb|BJ586455.1|BJ586455
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162249948|gb|FC427049.1|FC427049
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|37822400|gb|BJ580466.1|BJ580466
genomic: AAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162169794|gb|FC346150.1|FC346150
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162192274|gb|FC367799.1|FC367799
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162176318|gb|FC353503.1|FC353503
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|37832140|gb|BJ590152.1|BJ590152
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: GTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCNTGCNTTCGGTTACAACGCTGCCACAGGTGAEST: gi|37823462|gb|BJ581528.1|BJ581528
genomic: GTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCC-TGCCTTCGGTTACAACGCTGCCACAGGTGA
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162170395|gb|FC346787.1|FC346787
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162179963|gb|FC356034.1|FC356034
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162191286|gb|FC366860.1|FC366860
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|18338788|gb|BJ170813.1|BJ170813
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGTTCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162191910|gb|FC366915.1|FC366915
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|37823879|gb|BJ581945.1|BJ581945
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162153112|gb|FC329518.1|FC329518
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162186624|gb|FC363596.1|FC363596
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162185157|gb|FC362291.1|FC362291
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162169600|gb|FC345540.1|FC345540
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162160104|gb|FC335974.1|FC335974
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: TGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162192275|gb|FC367800.1|FC367800
genomic: TGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|208395400|gb|DC924468.1|DC924468
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162187014|gb|FC363420.1|FC363420
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162160105|gb|FC335975.1|FC335975
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|67694684|gb|BJ954917.1|BJ954917
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162190349|gb|FC365363.1|FC365363
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162190350|gb|FC365364.1|FC365364
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162150108|gb|FC326821.1|FC326821
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAA GTGTTGGCTAATGAAAACCCTGCCTTCGGNTACAACGCTGCCACAGGTGAGEST: gi|37832053|gb|BJ590065.1|BJ590065
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|37835833|gb|BJ593845.1|BJ593845
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|162150107|gb|FC326820.1|FC326820
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGEST: gi|37850696|gb|BJ608704.1|BJ608704
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGTTCAGAAATTGTGAGGCGGGCTTTGAGTTACCCTTTGAAGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctttctggattttgattgttctggacctcgacgagttactgttcttggattgtgtctgaatttttctcccttatgtgtgaagcttgataatgaatcagtttattcgttttttgaaaattaattcaaaaattgttatttgattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG