Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTGTCATCAGTCGTACCTAGCCTTGAGCCAGCAGGCATCGACTTGCTAGAGgtatgtgatctttcaactccggcatctgaattctgtgtggttttgtttttttttattatttctacttttagtctaattgttcgccttaagcaatgcatgcag

Basic information

species Physcomitrella patens
transcript PP1S25_198V6.5
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15261478|gb|BI436788.1|BI436788
EST:     TGTCATCAGTCGTACCTAGCCTTGAGCCAGCAGGCATCGACTTTCTAGAG                         TCATATGCCTCTTGAAACCAGAATGA
genomic: TGTCATCAGTCGTACCTAGCCTTGAGCCAGCAGGCATCGACTTGCTAGAGgtatgtgatc ... atgcatgcagTCATATGCCTCTTGAAACCAGAATGA
EST: gi|15261964|gb|BI437274.1|BI437274
EST:     TGTCATCAGTCGTACCTAGCCTTGAGCCAGCAGGCATCTTTTTGTTAGAG                         TCATATGCCTCTTGAAACCAGAATGATGGGAGCAGCGTATTCGGATATTGC
genomic: TGTCATCAGTCGTACCTAGCCTTGAGCCAGCAGGCATCGACTTGCTAGAGgtatgtgatc ... atgcatgcagTCATATGCCTCTTGAAACCAGAATGATGGGAGCAGCGTATTCGGATATTGC