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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGTGCTGAAGCTTTGTGATTTTGGATCTGCTATGTTCGCTGGGGAGAACGAAATCACACCTTACTTAGTCAGTCGATTTTATCGAGCACCTGAAATCAgtgagtacttgagcactagctttctttacaaattgatatgaactagcaagctttgtgttgcaagctactcttcagaattaagtatttctgtgctttcttt...

Basic information

species Physcomitrella patens
transcript PP1S250_28V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S250_28V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ38506 (Selaginella moellendorffii), 5'ss of exon 8
AACGTGCTGAAGCTTTGTGATTTTGGATCTGCTATGTTCGCTGGGGAGAACGAAATCACACCTTACTTAGTCAGTCGATTTTATCGAGCACCTGAAATCAgtgagtacttgagcactagctttctttacaaattgatatgaactagcaagctttgtgttgcaagctactcttcagaattaagtatttctgtgctttcttt
||| |||| ||||||||||| ||||| || || ||||| ||||| || ||||| ||||| || ||| | || || || |||||| ||||||| ||||||||| |||  |    |  |  || | ||    |  | ||||    | |        |                                             
AACTTGCTCAAGCTTTGTGACTTTGGTTCCGCAATGTTTGCTGGCGAAAACGAGATCACTCCGTACCTCGTGAGCCGCTTTTATAGAGCACCAGAAATCAgtaagtggtctttcttttcctcttttctggatctcatat---ttcgttgttccag---------------------------------------------