1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTGgtacgtcccttctctgccttacatcatttcttgaattctacatgtcttgtaccataagttgtagcaaaatcagtcgctgacctgactttccggatatttcttttgagcggagtgccaattacgtagattgtatatcaatagattaaattggtatgaagtcaaataagctgaaaatctgaggttatggtttggtaaag
species | Physcomitrella patens |
transcript | PP1S246_34V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTG ATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACAEST: gi|208373112|gb|DC948877.1|DC948877
genomic: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTGgtacgtccct ... tttggtaaagATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACA
EST: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTG ATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACAEST: gi|37825639|gb|BJ583705.1|BJ583705
genomic: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTGgtacgtccct ... tttggtaaagATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACA
EST: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTG ATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACAEST: gi|37844368|gb|BJ602376.1|BJ602376
genomic: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTGgtacgtccct ... tttggtaaagATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACA
EST: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTG ATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACAEST: gi|7067492|gb|AW497347.1|AW497347
genomic: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTGgtacgtccct ... tttggtaaagATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACA
EST: GTGTTGACAGAGTTTAGGAAGATCCAGCAGTG ATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACAEST: gi|162267515|gb|FC444266.1|FC444266
genomic: GTGTTGACAGAGTTTAGGAAGATCCAGCAGTGgtacgtccct ... tttggtaaagATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACA
EST: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTG ATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACAEST: gi|208382418|gb|DC927952.1|DC927952
genomic: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTGgtacgtccct ... tttggtaaagATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACA
EST: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCTAGCAGTG ATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACAEST: gi|208396134|gb|DC924600.1|DC924600
genomic: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTGgtacgtccct ... tttggtaaagATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACA
EST: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTG ATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACA
genomic: TTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTGgtacgtccct ... tttggtaaagATCAAGAGGACTGCACTGATGGTTGGAGTGACTTCGTGCGACACAAATACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTGgtacgtcccttctctgccttacatcatttcttgaattctacatgtcttgtaccataagttgtagcaaaatcagtcgctgacctgactttccggatatttcttttgagcggagtgccaattacgtagattgtatatcaatagattaaattggtatgaagtcaaataagctgaaaatctgaggttatggtttggtaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA