1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTGTTAGCTACGGGTGGCATTCCCATGGGCATTGGCAAAAACTCAGTAATCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAGgtctgtatagcatgcattcttgaaaatctctggttatggtctttgtgaagaatacgtctctcccttacgactccgtattacacatgcacgactattggtttcagttgggcaacgtaacaagtaagggggggcgggggtggcatgtgcag
species | Physcomitrella patens |
transcript | PP1S239_45V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAG ATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTACEST: gi|162260919|gb|FC437976.1|FC437976
genomic: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAGgtctgtatag ... gcatgtgcagATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTAC
EST: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAG ATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTACEST: gi|162260897|gb|FC437954.1|FC437954
genomic: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAGgtctgtatag ... gcatgtgcagATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTAC
EST: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAG ATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTACEST: gi|162241445|gb|FC418584.1|FC418584
genomic: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAGgtctgtatag ... gcatgtgcagATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTAC
EST: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAG ATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTACEST: gi|162182562|gb|FC357537.1|FC357537
genomic: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAGgtctgtatag ... gcatgtgcagATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTAC
EST: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAG ATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTACEST: gi|67507641|gb|BJ940521.1|BJ940521
genomic: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAGgtctgtatag ... gcatgtgcagATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTAC
EST: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAG ATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTACEST: gi|162182563|gb|FC357538.1|FC357538
genomic: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAGgtctgtatag ... gcatgtgcagATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTAC
EST: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAG ATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTAC
genomic: TCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAGgtctgtatag ... gcatgtgcagATTGTGAACAAGGACGGTGTGCAGGAGGCAGCCCGGGAGACAGATGGTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTTAGCTACGGGTGGCATTCCCATGGGCATTGGCAAAAACTCAGTAATCAAGAGAGCGATTGTTGACAAAAACGCACGAATTGGAGAGAACGTCCAGgtctgtatagcatgcattcttgaaaatctctggttatggtctttgtgaagaatacgtctctcccttacgactccgtattacacatgcacgactattggtttcagttgggcaacgtaacaagtaagggggggcgggggtggcatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA