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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTGGATCCCGATGTTCGGCTCCTTTTCGATGACTTGAATGCCCACATGGCTCCACGCTTTCGGAAATTGAATCATGCACTTGCTGAACTGgtatgcattcgttcaatcatgcactgtttttattatattttcattttacggtactgcaccgtactctggatgtatgcatgttagaatcttcaatgaccaa...

Basic information

species Physcomitrella patens
transcript PP1S234_26V6.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67695764|gb|BJ955997.1|BJ955997
EST:     CCCACATGGCTCCACGCTTTCGGAAATTGAATCATGCACTTGCTGAACTG                         GTGGATGATTACAGCATGGTCAACTTTATCCCTCTTGACATAAGAAATGAA
genomic: CCCACATGGCTCCACGCTTTCGGAAATTGAATCATGCACTTGCTGAACTGgtatgcattc ... gtttttgaagGTGGATGATTACAGCATGGTCAACTTTATCCCTCTTGACATAAGAAATGAA
EST: gi|37829705|gb|BJ587717.1|BJ587717
EST:     CCCACATGGCTCCACGCTTTCGGAAATTGAATCATGCACTTGCTGAACTG                         GTGGATGATTACAGCATGGTCAACTTTATCCCTCTTGACATAAGAAATGAA
genomic: CCCACATGGCTCCACGCTTTCGGAAATTGAATCATGCACTTGCTGAACTGgtatgcattc ... gtttttgaagGTGGATGATTACAGCATGGTCAACTTTATCCCTCTTGACATAAGAAATGAA
EST: gi|37849748|gb|BJ607756.1|BJ607756
EST:     CCCACATGGCTCCACGCTTTCGGAAATTGAATCATGCACTTGCTGAACTG                         GTGGATGATTACAGCATGGTCAACTTTATCCCTCTTGACATAAGAAATGAA
genomic: CCCACATGGCTCCACGCTTTCGGAAATTGAATCATGCACTTGCTGAACTGgtatgcattc ... gtttttgaagGTGGATGATTACAGCATGGTCAACTTTATCCCTCTTGACATAAGAAATGAA