1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGCAGAATACTGCACCTGGTACAGATGGTCAAAGCTTCGCGTTCGGTTCAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttgatcattgtgtcactctctgctctttctggattacgtgtgggtagcgcctttgtttgtttgtttgtttgtttgtttttttttgtttttttgt...
species | Physcomitrella patens |
transcript | PP1S230_50V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAAGTAATGTCGCAGGAGCTCCTCCTGGCGGGTTCAACTTTGGCTGAAAG GAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAGEST: gi|162163205|gb|FC340259.1|FC340259
genomic: CAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttga ... ccttatgcagGAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAG
EST: -AGTAAATGTCGCAGGAGCTCCTCCTGGCGGGTTCAACTTTGGCTGAAAG GAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAGEST: gi|162261123|gb|FC437478.1|FC437478
genomic: AAGT-AATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttga ... ccttatgcagGAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAG
EST: CAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAG GAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAGEST: gi|162150095|gb|FC325989.1|FC325989
genomic: CAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttga ... ccttatgcagGAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAG
EST: CAAGTAATGTCGCAGGAGCTCCTCCTGGCGGGTTCAACTTTGGCTGAAAG GAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAGEST: gi|162194198|gb|FC369489.1|FC369489
genomic: CAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttga ... ccttatgcagGAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAG
EST: CAAGTAATGTCGCAGGAGCTCCTCCTGGCGGGTTCAACTTTGGCTGAAAG GAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAGEST: gi|162182319|gb|FC357190.1|FC357190
genomic: CAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttga ... ccttatgcagGAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAG
EST: CAAGTAATGTCGCAGGAGCTCCTCCTGGCGGGTTCAACTTTGGCTGAAAG GAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAGEST: gi|162170802|gb|FC347416.1|FC347416
genomic: CAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttga ... ccttatgcagGAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAG
EST: CAAGTAATGTCGCAGGAGCTCCTCCTGGCGGGTTCAACTTTGGCTGAAAG GAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAGEST: gi|162261122|gb|FC437477.1|FC437477
genomic: CAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttga ... ccttatgcagGAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAG
EST: CAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAG GAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAGEST: gi|162254367|gb|FC430502.1|FC430502
genomic: CAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttga ... ccttatgcagGAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAG
EST: CAAGTAATGTCGCAGGAGCTCCTCCTGGCGGGTTCAACTTTGGCTGAAAG GAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAG
genomic: CAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttga ... ccttatgcagGAACGAGGCTTCTGGAGAAATCTCTTAATGCCTCAAACTACTTTTGAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCAGAATACTGCACCTGGTACAGATGGTCAAAGCTTCGCGTTCGGTTCAAGTAATGTCGCAGGAGCTCCTCCTGGTGGATTCAACTTTGGCTGAAAGgtacacttgatcattgtgtcactctctgctctttctggattacgtgtgggtagcgcctttgtttgtttgtttgtttgtttgtttttttttgtttttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA