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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATTATCTGCAAGGGGGCACAATTGAGATATACAGTAGAAATGCTGAACACAACACTGGGAAGTTTCCTGACATCGTTGCAGCAATGCCCAGgtatatcctacccgaattaagctgtcggtgaacgatctgagtgccattgtaacttacatcaatcaataagtatttgctcgacgaggcgtatattgcattt...

Basic information

species Physcomitrella patens
transcript PP1S223_54V6.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S223_54V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA12G08600.1 (Glycine max), 5'ss of exon 6
GTACATTATCTGCAAGGGGGCACAATTGAGATATACAGTAGAAATGCTGAACACAACACTGGGAAGTTTCCTGACATCGTTGCAGCAATGCCCAGgtatatcctacccgaattaagctgtcggtgaacgatctgagtgccattgtaacttacatcaatcaataagtatttgctcgacgaggcg-tatattgcattt---
 ||||||| ||| |    ||  || ||||||| |||||||||||||| ||||  || |||||||||||||||||  | ||||| ||  |  | ||||| |    | | | |||| |       |    ||  |  |   || | |  ||    |   | | |    | || ||   | ||  | || |||         
ATACATTACCTGGAGAATGGATCAGTTGAGATTTACAGTAGAAATGCAGAACGGAATACTGGGAAGTTTCCTGATGTTGTTGCCGCTGTTTCAAGgtaaaaa--aactgtattaggaatattatatttgaggtctggttcagtctttct-gtgtttgtta-tggacacttccttaccaagaagctacatttagagaaca

upper sequence: PP1S223_54V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA11G19880.1 (Glycine max), 5'ss of exon 6
GTACATTATCTGCAAGGGGGCACAATTGAGATATACAGTAGAAATGCTGAACACAACACTGGGAAGTTTCCTGACATCGTTGCAGCAATGCCCAGgtatatcctacccgaattaagctgtcggtgaacgatctgagt--gccattgtaacttacatcaatcaataagtatttgctcgacgaggcgtatattgcattt-
 ||||||| ||| |    ||| || ||||||| ||||||||| |||| ||||  || |||||||||||||||||  | ||||| ||  |  | ||||| |    |   | |||| |       |    | ||||  |  | | || ||  ||   |  ||  | |    ||  |  || |  || | ||  | |    
ATACATTACCTGGAGAATGGCTCAGTTGAGATTTACAGTAGACATGCAGAACGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCTGTTTCAAGgtaaaaaaaaat-gtattaggaatattatatgaggtctggttcagtctttctaggttggtt--atggacattccttaacaagaagctgcatttagagaacaaa

upper sequence: PP1S223_54V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT1G08130.1 (Arabidopsis thaliana), 5'ss of exon 6
GTACATTATCTGCAAGGGGGCACAATTGAGATATACAGTAGAAATGCTGAACACAACACTGGGAAGTTTCCTGACATCGTTGCAGCAATGCCCAGgtatatcctacccgaattaagctgtcggtgaacgatctgagtgccattgtaacttacatcaatcaataagtatttgctcgacgaggcgtatattgcattt
 |||||| | || | |  || ||| |||||||||||||| |||||||||||   |||||||||||||  || ||  | | |   ||  |  | ||||| |    | | |   |||   || |   |||  |     | | ||  |    |||   | | | | |    |  ||| | |  |              
ATACATTTTATGGAGGATGGTACATTTGAGATATACAGTCGAAATGCTGAAAGAAACACTGGGAAGTACCCGGATGTTGCTCTTGCGTTATCAAGgtaaac---atctggtgtaactggttga-aaacattagagattcaatctt--tctactgaagttagtgaaacat--ctcaatgcag--------------