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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGAGGTTCTTGATACTCCTGCCTCGGCTAGACACAAGCGTGGTTGTAACTGCAAAAAGTCCCTCTGTCTCAAAAAGTACTGCGAATGTTACCAGgtatacacggtgttattggtctttgtgcgggtttgtattccttgcttggttgtggtgtaactcatctatgtcttctcgaagactcaatgaattgttgctgtgctggacag

Basic information

species Physcomitrella patens
transcript PP1S220_14V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S220_14V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ22725 (Selaginella moellendorffii), 5'ss of exon 5
---GACGAGGT-TCTTGATACTCCTGCCTCGGCTAGACACAAGCGTGGTTGTAACTGCAAAAAGTCCCTCTGTCTCAAAAAGTACTGCGAATGTTACCAGgtatacacggtgttattggtctttgtgcgggtttgtattccttgcttggttgtggtgtaactcatctatgtcttctcgaagactcaatgaattgttgctgtgctggacag
   | | |  |  |  |||||  | |  || ||||| |||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||| | |    || |    | | ||       ||    |    |||||||| |  | |  || |                                              
GCAGCCCAATTGCCCCGATACAACAGGATCTGCTAGGCACAAGCGCGGCTGTAACTGCAAGAAGTCGCTGTGTCTGAAAAAGTACTGCGAATGCTACCAGgtaca-atcaagtcaagtctttctgcttatacttactatgtgcgcttggttttcatctgtctaaag--------------------------------------------

upper sequence: PP1S220_14V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ04883 (Selaginella moellendorffii), 5'ss of exon 2
---GACGAGGT-TCTTGATACTCCTGCCTCGGCTAGACACAAGCGTGGTTGTAACTGCAAAAAGTCCCTCTGTCTCAAAAAGTACTGCGAATGTTACCAGgtatacacggtgttattggtctttgtgcgggtttgtattccttgcttggttgtggtgtaactcatctatgtcttctcgaagactcaatgaattgttgctgtgctggacag
   | | |  |  |  |||||  | |  || ||||| |||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||| | |    || |    | | ||       ||    |    |||||||| |  | |  || |                                              
GCAGCCCAATTGCCCCGATACAACAGGATCTGCTAGGCACAAGCGCGGCTGTAACTGCAAGAAGTCGCTGTGTCTGAAAAAGTACTGCGAATGCTACCAGgtaca-atcaagtcaagtctttctgcttatacttaccatgtgcgcttggttttcatctgtctaaag--------------------------------------------