1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTTGATCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggtttcgtgaagaagattacttcattagctcttaatacccttttcctgatgatctcaattctcgtcaagtagagacacatcaaggacccaacaggtcgttaaggtgctcgtttcgaatgttacctggattagatgtgatgaaattgacttgactgcag
species | Physcomitrella patens |
transcript | PP1S219_94V6.4 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCATGNATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|162270288|gb|FC447300.1|FC447300
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: ACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|162179399|gb|FC355399.1|FC355399
genomic: ACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: ATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|162270289|gb|FC447301.1|FC447301
genomic: ATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|162166751|gb|FC342720.1|FC342720
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|162152577|gb|FC328855.1|FC328855
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|162250292|gb|FC425946.1|FC425946
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: CATGAATGACGAGACAGTACATCAGCTTTTGCA-GCAGGCCGTAGCTCAG GCTCAAGCTGGAGCEST: gi|162166620|gb|FC343512.1|FC343512
genomic: CATGAATGACGAGACAGTACATCAGCTTT-GCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGC
EST: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCEST: gi|162150766|gb|FC327038.1|FC327038
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGC
EST: CAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTG-TAGCCCTAGTGACATGATGGATGGGCGTEST: gi|162154906|gb|FC331948.1|FC331948
genomic: CAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCEST: gi|162179122|gb|FC355587.1|FC355587
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGC
EST: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|208373778|gb|DC956294.1|DC956294
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|208396900|gb|DC915948.1|DC915948
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: TCATGNATGACGAGACAGTACATCAGC-TTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|162150767|gb|FC327039.1|FC327039
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|208349261|gb|DC918011.1|DC918011
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: TCA-GAA-GACGAGACAGTACATCAGC-TTGCAAGCAGGCCGTAGNTCAG GCTCAAGCTGGAACAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|162270867|gb|FC446896.1|FC446896
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: AGCAGGCCGTAGCTCAG GCTCAAGTTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGTEST: gi|162156546|gb|FC332154.1|FC332154
genomic: AGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
EST: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAG GCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
genomic: TCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggttt ... ttgactgcagGCTCAAGCTGGAGCAGATGTTGTTAGCCCTAGTGACATGATGGATGGGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGATCATGAATGACGAGACAGTACATCAGCTTTGCAAGCAGGCCGTAGCTCAGgtacgggtttcgtgaagaagattacttcattagctcttaatacccttttcctgatgatctcaattctcgtcaagtagagacacatcaaggacccaacaggtcgttaaggtgctcgtttcgaatgttacctggattagatgtgatgaaattgacttgactgcag
- - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AGCTCA