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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAAgtaatacttcatcccacttttacggttaacgctcaggctttttagtctggcagcctcactctttttgttgatttttatctgattttttttcttgttgttt...

Basic information

species Physcomitrella patens
transcript PP1S218_19V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162164429|gb|FC341048.1|FC341048
EST:     GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA                         CCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
genomic: GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAAgtaatacttc ... gactgtgcagCCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
EST: gi|162167702|gb|FC344016.1|FC344016
EST:     GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA                         CCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
genomic: GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAAgtaatacttc ... gactgtgcagCCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
EST: gi|162171311|gb|FC347236.1|FC347236
EST:     GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA                         CCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
genomic: GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAAgtaatacttc ... gactgtgcagCCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
EST: gi|162235485|gb|FC411308.1|FC411308
EST:     GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA                         CCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
genomic: GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAAgtaatacttc ... gactgtgcagCCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
EST: gi|162199213|gb|FC375049.1|FC375049
EST:     GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA                         CCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
genomic: GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAAgtaatacttc ... gactgtgcagCCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
EST: gi|162167280|gb|FC342845.1|FC342845
EST:     GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAA                         CCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG
genomic: GTCCTCGCCTCTCTTTCTAAGTGCATCGAAACTTTGAAAAgtaatacttc ... gactgtgcagCCCTAGTGAGCTTTTCAACTTACACAGATGCACAGAAGACAGCAGCTTCAG