1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGCTCTGGAGTTGGTTTCATTCCACACGGTGTCGAAGGGTTTCCTCGGAGAGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAGgttcctacccatcattcaaaacactttgcctcacaatttgtagatgtgttttcttttattctttccgaatactactcccaatgaagtacgctccttcaagctgtatcaatataacatgcagttctctatctcatttctggttttgtaacgttcag
species | Physcomitrella patens |
transcript | PP1S215_28V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAG ACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTCEST: gi|162178885|gb|FC354817.1|FC354817
genomic: GTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAGgttcctaccc ... taacgttcagACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTC
EST: AGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAG ACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTCEST: gi|162179082|gb|FC356483.1|FC356483
genomic: AGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAGgttcctaccc ... taacgttcagACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTC
EST: GTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAG ACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTCEST: gi|162186162|gb|FC361366.1|FC361366
genomic: GTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAGgttcctaccc ... taacgttcagACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTC
EST: AGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAG ACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTCEST: gi|162189252|gb|FC366748.1|FC366748
genomic: AGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAGgttcctaccc ... taacgttcagACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTC
EST: GATACTTTGAAATGACCAATATTCACCCCAAG ACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTCEST: gi|162269857|gb|FC445387.1|FC445387
genomic: GATACTTTGAAATGACCAATATTCACCCCAAGgttcctaccc ... taacgttcagACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTC
EST: AGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAG ACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTCEST: gi|162217937|gb|FC393933.1|FC393933
genomic: AGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAGgttcctaccc ... taacgttcagACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTC
EST: AGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAG ACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTCEST: gi|162151906|gb|FC328152.1|FC328152
genomic: AGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAGgttcctaccc ... taacgttcagACTGTGGACGAGCTCTACAAGGTTTCCTCCATTGCCCTGAGTCCTAATGTC
EST: AGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAG ACTGTGGACGAGCTCTACAAGGTTT
genomic: AGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAGgttcctaccc ... taacgttcagACTGTGGACGAGCTCTACAAGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCTGGAGTTGGTTTCATTCCACACGGTGTCGAAGGGTTTCCTCGGAGAGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAGgttcctacccatcattcaaaacactttgcctcacaatttgtagatgtgttttcttttattctttccgaatactactcccaatgaagtacgctccttcaagctgtatcaatataacatgcagttctctatctcatttctggttttgtaacgttcag
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