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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGCTTGCCTCCTTCTATGAGGGTTATTACGAGAATAAGGGTGTGAACATCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcctgatccttgaagctgcaaatgatagttatcggtgttaggaaagcttagaaagtaggagtgacgtaatatttctgttaggatctgtaacctc...

Basic information

species Physcomitrella patens
transcript PP1S211_74V6.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162272098|gb|FC447892.1|FC447892
EST:     TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|37847063|gb|BJ605071.1|BJ605071
EST:     TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGNCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|162269070|gb|FC444938.1|FC444938
EST:     TCATCAAGGGAACGTCTGTGACTGC-TTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|162178671|gb|FC354460.1|FC354460
EST:     GTGACTGCTTTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: GTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|37842298|gb|BJ600306.1|BJ600306
EST:     GTGACTGCTTTTGAGAAAGATGATAATGNCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTNTCGTG
genomic: GTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|162252208|gb|FC425886.1|FC425886
EST:     TCATCAAGGGAACGTCTGTGACTGC-TTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|162162176|gb|FC337750.1|FC337750
EST:     GACTGCTTTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGANAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: GACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|162150157|gb|FC326034.1|FC326034
EST:     ATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: ATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|37853592|gb|BJ611600.1|BJ611600
EST:     CATCAAGGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: CATCAA-GGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|162169587|gb|FC345527.1|FC345527
EST:     TCATCAAGGGAACGTCTGTGACTGC-TTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|67693861|gb|BJ954094.1|BJ954094
EST:     TCATCAAGGGAACGTCTGTGACTGC-TTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|162217182|gb|FC392546.1|FC392546
EST:     TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|162247321|gb|FC420285.1|FC420285
EST:     TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|208345387|gb|DC917312.1|DC917312
EST:     CATCNAGGGNAACGTCTGTGACTGC-TTTGAGAAAGATGATAATGNCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: CATCAAGGG-AACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
EST: gi|162272099|gb|FC447893.1|FC447893
EST:     TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCAT                         GTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG
genomic: TCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcct ... gctgatgcagGTATCGAAAGTAATTCTGAAAGATGGAAGAACGTTGGACAGCACTCTCGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGCTTGCCTCCTTCTATGAGGGTTATTACGAGAATAAGGGTGTGAACATCATCAAGGGAACGTCTGTGACTGCTTTTGAGAAAGATGATAATGGCCATgtaagatcctgatccttgaagctgcaaatgatagttatcggtgttaggaaagcttagaaagtaggagtgacgtaatatttctgttaggatctgtaacctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG