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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTCGAAATGAAGACTTTGTGGACAATTGATGGCATTGGAACACCTGACAAAAATTCCAGACTCCACTCATTGgtgggtttttcacctgatgctattgttgactcggatcctgttttgttattcatgagaaacttcgattgaaaatttaatttatgatgctttgattgaaacag

Basic information

species Physcomitrella patens
transcript PP1S208_168V6.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18366432|gb|BJ198511.1|BJ198511
EST:     CAATTGATGGCATTGGAACACCTGACAAAAATTCCAGACTCCACTCATTG                         GTTGACTCGTATCTTATGCATTATGGATATAGTGATACAGCTAGCGCATTG
genomic: CAATTGATGGCATTGGAACACCTGACAAAAATTCCAGACTCCACTCATTGgtgggttttt ... attgaaacagGTTGACTCGTATCTTATGCATTATGGATATAGTGATACAGCTAGCGCATTG
EST: gi|100400993|gb|BY973046.1|BY973046
EST:     NATTGATGGCATTGGNAACAC-TGACAAAA-TTCCAGACTCCACTCATTG                         GGTGACTCGTATCTNATGCATTATG-ATATAGTGATACAGCTAGCGCATTG
genomic: AATTGATGGCATTGG-AACACCTGACAAAAATTCCAGACTCCACTCATTGgtgggttttt ... attgaaacagGTTGACTCGTATCTTATGCATTATGGATATAGTGATACAGCTAGCGCATTG
EST: gi|100390547|gb|BY952955.1|BY952955
EST:     CNATTGATGGCATTGGAACACCTGACAAAAATTCCAGACTCCACTCATTG                         GNTGACTCGTATCTAATGCATTATGGATATAGTGATACAGCTAGCGCATTG
genomic: CAATTGATGGCATTGGAACACCTGACAAAAATTCCAGACTCCACTCATTGgtgggttttt ... attgaaacagGTTGACTCGTATCTTATGCATTATGGATATAGTGATACAGCTAGCGCATTG