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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTCACTTGGCGATTGTGTGAAATGAAACAAAATGACGGATCGGCTCCATTAAAGTTGGGCTATATTCGGCTCTCCACCTTCAATCAGAATTCCTCCAgtacgtccacgatgctctcttgtttgacttcacatgtgaattaatatttgaacttcttacttgcgctccatgacgacaacttcaacatggttctctgaga...

Basic information

species Physcomitrella patens
transcript PP1S199_127V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162180389|gb|FC355810.1|FC355810
EST:     ATTAAAGTTGGGCTATATTCGGCTCTCCACCTTCAATCAGAATTCCTCCA                         GTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
genomic: ATTAAAGTTGGGCTATATTCGGCTCTCCACCTTCAATCAGAATTCCTCCAgtacgtccac ... tacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
EST: gi|162195103|gb|FC371378.1|FC371378
EST:     TCTCCACCTTCAATCAGAATTCCTCCA                         GTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
genomic: TCTCCACCTTCAATCAGAATTCCTCCAgtacgtccac ... tacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
EST: gi|162192956|gb|FC371458.1|FC371458
EST:     ATTAAAGTTGGGCTATATTCGGCTCTCCACCTTCAATCAGAATTCCTCCA                         GTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
genomic: ATTAAAGTTGGGCTATATTCGGCTCTCCACCTTCAATCAGAATTCCTCCAgtacgtccac ... tacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
EST: gi|162224470|gb|FC399846.1|FC399846
EST:     CCACC-TCAATCAGAAATTCCTCCA                         GTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
genomic: CCACCTTCAATCAG-AATTCCTCCAgtacgtccac ... tacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT