1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTACAGCTGGACCAAAGGTTTGAAAACAGGAATGTACTATTTACGGTCCAGAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAGgtaagacatacaccctcgttcttgtaataatcagtagtactctgctccttgcacagatgcttttctacattgtggtgacatgatttggttattgtgctgcag
species | Physcomitrella patens |
transcript | PP1S195_46V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAG ACCAAGCAAGCAACACCTGCGGCAGCTATTGCGGAAGATCTGGAAGTGAAGEST: gi|162194733|gb|FC371580.1|FC371580
genomic: GAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAGgtaagacata ... tgtgctgcagACCAAGCAAGCAACACCTGCGGCAGCTATTGCGGAAGATCTGGAAGTGAAG
EST: GAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAG ACCAAGCAAGCAACACCTGCGGCAGCTATTGCGGAAGATCTGGAAGTGAAGEST: gi|162192931|gb|FC369379.1|FC369379
genomic: GAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAGgtaagacata ... tgtgctgcagACCAAGCAAGCAACACCTGCGGCAGCTATTGCGGAAGATCTGGAAGTGAAG
EST: GAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAG ACCAAGCAAGCAACACCTGCGGCAGCTATTGCGGAAGATCTGGAAGTGAAGEST: gi|162268642|gb|FC443696.1|FC443696
genomic: GAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAGgtaagacata ... tgtgctgcagACCAAGCAAGCAACACCTGCGGCAGCTATTGCGGAAGATCTGGAAGTGAAG
EST: GAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAG ACCAAGCAAGCAACACCTGCGGCAGCTATTGCGGAAGATCTGGAAGTGAAGEST: gi|162255798|gb|FC431458.1|FC431458
genomic: GAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAGgtaagacata ... tgtgctgcagACCAAGCAAGCAACACCTGCGGCAGCTATTGCGGAAGATCTGGAAGTGAAG
EST: GAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAG ACCAAGCAAGCAACACCTGCGGCAGCTATTGCGGAAGATCTGGAAGTGAAG
genomic: GAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAGgtaagacata ... tgtgctgcagACCAAGCAAGCAACACCTGCGGCAGCTATTGCGGAAGATCTGGAAGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAGCTGGACCAAAGGTTTGAAAACAGGAATGTACTATTTACGGTCCAGAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAGgtaagacatacaccctcgttcttgtaataatcagtagtactctgctccttgcacagatgcttttctacattgtggtgacatgatttggttattgtgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA